Sophia Tang
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Browse files- tr2d2-dna/README.md +1 -1
- tr2d2-pep/README.md +1 -1
tr2d2-dna/README.md
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This part of the code is for finetuning DNA sequence models for optimizing DNA enhancer activity with TR2-D2.
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The codebase is built upon [
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## Environment Installation
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```
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This part of the code is for finetuning DNA sequence models for optimizing DNA enhancer activity with TR2-D2.
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The codebase is partially built upon [PepTune (Tang et.al, 2024)](https://arxiv.org/abs/2412.17780), [MDLM (Sahoo et.al, 2023)](https://github.com/kuleshov-group/mdlm), [Drakes (Wang et.al, 2024)](https://github.com/ChenyuWang-Monica/DRAKES), and [MDNS (Zhu et.al, 2025)](https://arxiv.org/abs/2508.10684).
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## Environment Installation
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```
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tr2d2-pep/README.md
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This part of the code is for finetuning a peptide MDM to optimize multiple therapeutic properties, including binding affinity to a protein target, solubility, non-hemolysis, non-fouling, and cell membrane permeability, with TR2-D2.
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The codebase is built upon [PepTune (Tang et.al, 2024)](https://arxiv.org/abs/2412.17780), [MDLM (Sahoo et.al, 2023)](https://github.com/kuleshov-group/mdlm),
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## Environment Installation
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```
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This part of the code is for finetuning a peptide MDM to optimize multiple therapeutic properties, including binding affinity to a protein target, solubility, non-hemolysis, non-fouling, and cell membrane permeability, with TR2-D2.
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The codebase is partially built upon [PepTune (Tang et.al, 2024)](https://arxiv.org/abs/2412.17780), [MDLM (Sahoo et.al, 2023)](https://github.com/kuleshov-group/mdlm), and [MDNS (Zhu et.al, 2025)](https://arxiv.org/abs/2508.10684).
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## Environment Installation
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```
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