Improve model card: Add fill-mask pipeline tag, license, language, and domain tags
Browse filesThis PR improves the model card by:
* Adding the `license: apache-2.0` metadata.
* Specifying the `pipeline_tag: fill-mask`, enabling better discoverability at https://huggingface.co/models?pipeline_tag=fill-mask.
* Including relevant `language: ja` and additional `tags` such as `japanese`, `pharmaceutical`, `bert`, and `continual-pretraining`.
* Adding a direct link to the paper and the GitHub repository at the top of the model card for better visibility.
README.md
CHANGED
|
@@ -1,16 +1,23 @@
|
|
| 1 |
---
|
| 2 |
library_name: transformers
|
| 3 |
-
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 4 |
---
|
| 5 |
|
| 6 |
-
# Model
|
| 7 |
|
| 8 |
-
|
| 9 |
-
Our **JpharmaBERT (base)** is a continually pre-trained version of the BERT model ([tohoku-nlp/bert-base-japanese-v3](https://huggingface.co/tohoku-nlp/bert-base-japanese-v3)), further trained on pharmaceutical data — the same dataset used for [eques/jpharmatron](https://huggingface.co/EQUES/JPharmatron-7B).
|
| 10 |
|
| 11 |
-
|
|
|
|
|
|
|
| 12 |
|
| 13 |
-
<!-- Address questions around how the model is intended to be used, including the foreseeable users of the model and those affected by the model. -->
|
| 14 |
```python
|
| 15 |
import torch
|
| 16 |
from transformers import AutoModelForMaskedLM, AutoTokenizer, pipeline
|
|
@@ -34,25 +41,25 @@ for result in results:
|
|
| 34 |
|
| 35 |
### Training Data
|
| 36 |
|
| 37 |
-
<!-- This should link to a Dataset Card, perhaps with a short stub of information on what the training data is all about as well as documentation related to data pre-processing or additional filtering. -->
|
| 38 |
We used the same dataset as [eques/jpharmatron](https://huggingface.co/EQUES/JPharmatron-7B) for training our JpharmaBERT, which consists of:
|
| 39 |
-
- Japanese text data (2B tokens) collected from pharmaceutical documents such as academic papers and package inserts
|
| 40 |
-
- English data (8B tokens) obtained from PubMed abstracts
|
| 41 |
-
- Pharmaceutical-related data (1.2B tokens) extracted from the multilingual CC100 dataset
|
| 42 |
|
| 43 |
-
|
|
|
|
|
|
|
|
|
|
|
|
|
| 44 |
(For details, please refer to our paper about Jpharmatron: [link](https://arxiv.org/abs/2505.16661))
|
| 45 |
|
| 46 |
#### Training Hyperparameters
|
| 47 |
|
| 48 |
The model was continually pre-trained with the following settings:
|
| 49 |
|
| 50 |
-
|
| 51 |
-
|
| 52 |
-
|
| 53 |
-
|
| 54 |
-
|
| 55 |
-
|
| 56 |
|
| 57 |
## Model Card Authors
|
| 58 |
|
|
|
|
| 1 |
---
|
| 2 |
library_name: transformers
|
| 3 |
+
license: apache-2.0
|
| 4 |
+
language: ja
|
| 5 |
+
pipeline_tag: fill-mask
|
| 6 |
+
tags:
|
| 7 |
+
- japanese
|
| 8 |
+
- pharmaceutical
|
| 9 |
+
- bert
|
| 10 |
+
- continual-pretraining
|
| 11 |
---
|
| 12 |
|
| 13 |
+
# JpharmaBERT: A Japanese Language Model for Pharmaceutical NLP
|
| 14 |
|
| 15 |
+
[\ud83d\udcda Paper](https://huggingface.co/papers/2505.16661) - [\ud83d\udcbb Code](https://github.com/EQUES-AI/JpharmaBERT)
|
|
|
|
| 16 |
|
| 17 |
+
This is the **JpharmaBERT (base)** model, presented in the paper [A Japanese Language Model and Three New Evaluation Benchmarks for Pharmaceutical NLP](https://huggingface.co/papers/2505.16661). It is a continually pre-trained version of the BERT model ([tohoku-nlp/bert-base-japanese-v3](https://huggingface.co/tohoku-nlp/bert-base-japanese-v3)), further trained on pharmaceutical data.
|
| 18 |
+
|
| 19 |
+
# Example Usage
|
| 20 |
|
|
|
|
| 21 |
```python
|
| 22 |
import torch
|
| 23 |
from transformers import AutoModelForMaskedLM, AutoTokenizer, pipeline
|
|
|
|
| 41 |
|
| 42 |
### Training Data
|
| 43 |
|
|
|
|
| 44 |
We used the same dataset as [eques/jpharmatron](https://huggingface.co/EQUES/JPharmatron-7B) for training our JpharmaBERT, which consists of:
|
|
|
|
|
|
|
|
|
|
| 45 |
|
| 46 |
+
* Japanese text data (2B tokens) collected from pharmaceutical documents such as academic papers and package inserts
|
| 47 |
+
* English data (8B tokens) obtained from PubMed abstracts
|
| 48 |
+
* Pharmaceutical-related data (1.2B tokens) extracted from the multilingual CC100 dataset
|
| 49 |
+
|
| 50 |
+
After removing duplicate entries across these sources, the final dataset contains approximately 9 billion tokens.
|
| 51 |
(For details, please refer to our paper about Jpharmatron: [link](https://arxiv.org/abs/2505.16661))
|
| 52 |
|
| 53 |
#### Training Hyperparameters
|
| 54 |
|
| 55 |
The model was continually pre-trained with the following settings:
|
| 56 |
|
| 57 |
+
* Mask probability: 15%
|
| 58 |
+
* Maximum sequence length: 512 tokens
|
| 59 |
+
* Number of training epochs: 6
|
| 60 |
+
* Learning rate: 1e-4
|
| 61 |
+
* Warm-up steps: 10,000
|
| 62 |
+
* Per-device training batch size: 64
|
| 63 |
|
| 64 |
## Model Card Authors
|
| 65 |
|