# Python dependencies
numpy>=1.21.0
scipy>=1.7.0
biopython>=1.79
requests>=2.26.0
pyyaml>=6.0
transformers>=4.30.0
huggingface-hub>=0.16.0
torch>=2.0.0

# Web GUI dependencies
fastapi>=0.100.0
uvicorn[standard]>=0.23.0
websockets>=11.0
python-multipart>=0.0.6

# Task queue (optional)
celery>=5.3.0
redis>=4.6.0

# Database
pymongo>=4.4.0

# CLI interface
click>=8.1.0
rich>=13.0.0

# System and utilities
psutil>=5.9.0
aiohttp>=3.8.0
pydantic>=2.0.0
tqdm>=4.65.0
pandas>=2.0.0
matplotlib>=3.7.0
seaborn>=0.12.0