Fangyu Liu
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README.md
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tags:
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- biomedical
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- lexical
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datasets:
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- UMLS
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**[news]** A cross-lingual extension of SapBERT will appear in the main onference of **ACL 2021**! <br>
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**[news]** SapBERT will appear in the conference proceedings of **NAACL 2021**!
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### SapBERT-PubMedBERT
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SapBERT by [Liu et al. (2020)](https://arxiv.org/pdf/2010.11784.pdf). Trained with [UMLS](https://www.nlm.nih.gov/research/umls/licensedcontent/umlsknowledgesources.html) 2020AA (English only), using [microsoft/BiomedNLP-PubMedBERT-base-uncased-abstract-fulltext](https://huggingface.co/microsoft/BiomedNLP-PubMedBERT-base-uncased-abstract-fulltext) as the base model.
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### Citation
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```bibtex
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license: apache-2.0
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language:
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- en
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tags:
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- biomedical
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- lexical semantics
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- bionlp
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- biology
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- science
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- embedding
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- entity linking
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---
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---
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datasets:
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- UMLS
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**[news]** A cross-lingual extension of SapBERT will appear in the main onference of **ACL 2021**! <br>
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**[news]** SapBERT will appear in the conference proceedings of **NAACL 2021**!
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### Expected input and output
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The input should be a string of biomedical entity names, e.g., "covid infection" or "Hydroxychloroquine". The [CLS] embedding of the last layer is regarded as the output.
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### SapBERT-PubMedBERT
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SapBERT by [Liu et al. (2020)](https://arxiv.org/pdf/2010.11784.pdf). Trained with [UMLS](https://www.nlm.nih.gov/research/umls/licensedcontent/umlsknowledgesources.html) 2020AA (English only), using [microsoft/BiomedNLP-PubMedBERT-base-uncased-abstract-fulltext](https://huggingface.co/microsoft/BiomedNLP-PubMedBERT-base-uncased-abstract-fulltext) as the base model.
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### Citation
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```bibtex
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