### Godot version

Master (0ddd9c3e8f9088fa139e25b2903289d727073e12)

### System information

PopOS 22.04 - Intel integrated graphics - all backends

### Issue description

When there are popup windows in the editor, I cannot click on the "Confirm"/"Cancel" type buttons at the button. 

I have the issue both in the project manager (importing projects I can click on files etc. but cannot click "open") and when running the editor (cannot click "Save&Quit" etc.)

Sometimes the editor correctly highlights the buttons and I can use the arrow keys to navigate the buttons and "enter" to confirm my selection.

_I can navigate the editor closing dialogue with tab/arrow keys_
![Screenshot from 2023-01-16 14-24-06](https://user-images.githubusercontent.com/16521339/212774269-d784ea5e-5921-4460-9124-48978939c8e7.png)

_I can't navigate the project import dialogue with tab/arrow keys_
![Screenshot from 2023-01-16 14-29-00](https://user-images.githubusercontent.com/16521339/212774683-0a80795a-eed4-4e65-b2ca-3562c25d71fd.png)


### Steps to reproduce

Run the editor

### Minimal reproduction project

Reproducible in the project manager
if (rendering_driver == "opengl3") {
		if (getenv("DRI_PRIME") == nullptr) {
			int use_prime = -1;
			if (getenv("PRIMUS_DISPLAY") ||
					getenv("PRIMUS_libGLd") ||
					getenv("PRIMUS_libGLa") ||
					getenv("PRIMUS_libGL") ||
					getenv("PRIMUS_LOAD_GLOBAL") ||
					getenv("BUMBLEBEE_SOCKET")) {
				print_verbose("Optirun/primusrun detected. Skipping GPU detection");
				use_prime = 0;
			}
			
			
			
			if (use_prime == -1 && getenv("LD_LIBRARY_PATH") && !getenv("STEAM_RUNTIME_LIBRARY_PATH")) {
				String ld_library_path(getenv("LD_LIBRARY_PATH"));
				Vector<String> libraries = ld_library_path.split(":");
				for (int i = 0; i < libraries.size(); ++i) {
					if (FileAccess::exists(libraries[i] + "/libGL.so.1") ||
							FileAccess::exists(libraries[i] + "/libGL.so")) {
						print_verbose("Custom libGL override detected. Skipping GPU detection");
						use_prime = 0;
					}
				}
			}
			if (use_prime == -1) {
				print_verbose("Detecting GPUs, set DRI_PRIME in the environment to override GPU detection logic.");
				use_prime = detect_prime();
			}