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- [ ] I have searched the [issues](https://github.com/apache/dubbo/issues) of this repository and believe that this is not a duplicate.

### Environment

* Dubbo version: 3.1.1
* Operating System version: xxx
* Java version: xxx

### Steps to reproduce this issue

1. xxx
2. xxx
3. xxx

Pls. provide [GitHub address] to reproduce this issue.

### Expected Behavior

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### Actual Behavior

![image](https://user-images.githubusercontent.com/9292748/209817200-def8712e-1992-4cc6-987c-d872d89a493c.png)

配置一个应用级配置，有三个接口，但是最后元数据刷新的却只有一个接口，另外两个接口的timeout 还是不变，重启后才变
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*/
package org.apache.dubbo.registry.integration;
import org.apache.dubbo.common.URL;
import org.apache.dubbo.common.config.ConfigurationUtils;
import org.apache.dubbo.common.config.configcenter.DynamicConfiguration;
import org.apache.dubbo.common.logger.ErrorTypeAwareLogger;
import org.apache.dubbo.common.logger.LoggerFactory;
import org.apache.dubbo.common.threadpool.manager.FrameworkExecutorRepository;
import org.apache.dubbo.common.timer.HashedWheelTimer;
import org.apache.dubbo.common.url.component.ServiceConfigURL;
import org.apache.dubbo.common.utils.CollectionUtils;
import org.apache.dubbo.common.utils.NamedThreadFactory;
import org.apache.dubbo.common.utils.StringUtils;
import org.apache.dubbo.common.utils.UrlUtils;
import org.apache.dubbo.registry.NotifyListener;
import org.apache.dubbo.registry.Registry;
import org.apache.dubbo.registry.RegistryFactory;
import org.apache.dubbo.registry.RegistryService;
import org.apache.dubbo.registry.client.ServiceDiscoveryRegistryDirectory;
import org.apache.dubbo.registry.client.migration.MigrationClusterInvoker;
import org.apache.dubbo.registry.client.migration.ServiceDiscoveryMigrationInvoker;
import org.apache.dubbo.registry.retry.ReExportTask;
import org.apache.dubbo.registry.support.SkipFailbackWrapperException;
import org.apache.dubbo.rpc.Exporter;
import org.apache.dubbo.rpc.Invoker;
import org.apache.dubbo.rpc.Protocol;
import org.apache.dubbo.rpc.ProtocolServer;
import org.apache.dubbo.rpc.ProxyFactory;
import org.apache.dubbo.rpc.RpcException;
import org.apache.dubbo.rpc.cluster.Cluster;