### Godot version

1f22c48

### System information

Linux (Fedora 36)

### Issue description

Pull request https://github.com/godotengine/godot/pull/70052 (commit https://github.com/godotengine/godot/commit/1f22c482e192ef7df57fdc182243459d3dc4f232) seems to break the way keyboard inputs are handled in the Godot editor when using nonstandard keyboard layouts (e.g, I am using `de neo`).

Before said commit (tested with `beta14` and the direct parent, `81fe3715b8`) keyboard shortcuts in the editor would use the actual key pressed depending on the current keyboard layout. After said commit, keyboard shortcuts require pressing the key where it would be on a standard (QWERTY?) layout instead.

That behavior is, in my opinion, incorrect. It's different from the previous behavior and also different from every other application on my machine, breaking my muscle memory. I don't think customizing all of the shortcuts manually is a valid workaround.

### Steps to reproduce

For example:
1. Open any project
2. Press Ctrl-S, it won't save
3. Press Ctrl-[the key where S would be on QWERTY], it saves

### Minimal reproduction project

N/A
_THREAD_SAFE_METHOD_
	ERR_FAIL_COND_V(!windows.has(p_window), WINDOW_MODE_WINDOWED);
	const WindowData &wd = windows[p_window];
	if (wd.fullscreen) { 
		if (wd.exclusive_fullscreen) {
			return WINDOW_MODE_EXCLUSIVE_FULLSCREEN;
		} else {
			return WINDOW_MODE_FULLSCREEN;
		}
	}
	
	
	if (_window_maximize_check(p_window, "_NET_WM_STATE")) {
		return WINDOW_MODE_MAXIMIZED;
	}
	{
		if (_window_minimize_check(p_window)) {
			return WINDOW_MODE_MINIMIZED;
		}
	}
	
	return WINDOW_MODE_WINDOWED;
}
void DisplayServerX11::window_set_flag(WindowFlags p_flag, bool p_enabled, WindowID p_window) {