### Godot version

Master (0ddd9c3e8f9088fa139e25b2903289d727073e12)

### System information

PopOS 22.04 - Intel integrated graphics - all backends

### Issue description

When there are popup windows in the editor, I cannot click on the "Confirm"/"Cancel" type buttons at the button. 

I have the issue both in the project manager (importing projects I can click on files etc. but cannot click "open") and when running the editor (cannot click "Save&Quit" etc.)

Sometimes the editor correctly highlights the buttons and I can use the arrow keys to navigate the buttons and "enter" to confirm my selection.

_I can navigate the editor closing dialogue with tab/arrow keys_
![Screenshot from 2023-01-16 14-24-06](https://user-images.githubusercontent.com/16521339/212774269-d784ea5e-5921-4460-9124-48978939c8e7.png)

_I can't navigate the project import dialogue with tab/arrow keys_
![Screenshot from 2023-01-16 14-29-00](https://user-images.githubusercontent.com/16521339/212774683-0a80795a-eed4-4e65-b2ca-3562c25d71fd.png)


### Steps to reproduce

Run the editor

### Minimal reproduction project

Reproducible in the project manager
for (int j = 0; j < dev->num_classes; j++) {
#ifdef TOUCH_ENABLED
			if (dev->classes[j]->type == XITouchClass && ((XITouchClassInfo *)dev->classes[j])->mode == XIDirectTouch) {
				direct_touch = true;
			}
#endif
			if (dev->classes[j]->type == XIValuatorClass) {
				XIValuatorClassInfo *class_info = (XIValuatorClassInfo *)dev->classes[j];
				if (class_info->number == VALUATOR_ABSX && class_info->mode == XIModeAbsolute) {
					resolution_x = class_info->resolution;
					abs_x_min = class_info->min;
					abs_x_max = class_info->max;
					absolute_mode = true;
				} else if (class_info->number == VALUATOR_ABSY && class_info->mode == XIModeAbsolute) {
					resolution_y = class_info->resolution;
					abs_y_min = class_info->min;
					abs_y_max = class_info->max;
					absolute_mode = true;
				} else if (class_info->number == VALUATOR_PRESSURE && class_info->mode == XIModeAbsolute) {
					pressure_min = class_info->min;
					pressure_max = class_info->max;
				} else if (class_info->number == VALUATOR_TILTX && class_info->mode == XIModeAbsolute) {
					tilt_x_min = class_info->min;
					tilt_x_max = class_info->max;
				} else if (class_info->number == VALUATOR_TILTY && class_info->mode == XIModeAbsolute) {
					tilt_y_min = class_info->min;
					tilt_y_max = class_info->max;
				}
			}
		}