### Godot version

Master (0ddd9c3e8f9088fa139e25b2903289d727073e12)

### System information

PopOS 22.04 - Intel integrated graphics - all backends

### Issue description

When there are popup windows in the editor, I cannot click on the "Confirm"/"Cancel" type buttons at the button. 

I have the issue both in the project manager (importing projects I can click on files etc. but cannot click "open") and when running the editor (cannot click "Save&Quit" etc.)

Sometimes the editor correctly highlights the buttons and I can use the arrow keys to navigate the buttons and "enter" to confirm my selection.

_I can navigate the editor closing dialogue with tab/arrow keys_
![Screenshot from 2023-01-16 14-24-06](https://user-images.githubusercontent.com/16521339/212774269-d784ea5e-5921-4460-9124-48978939c8e7.png)

_I can't navigate the project import dialogue with tab/arrow keys_
![Screenshot from 2023-01-16 14-29-00](https://user-images.githubusercontent.com/16521339/212774683-0a80795a-eed4-4e65-b2ca-3562c25d71fd.png)


### Steps to reproduce

Run the editor

### Minimal reproduction project

Reproducible in the project manager
xi.tilt.x = *values / pen_tilt_x_range[1];
								}
							}
							values++;
						}
						if (XIMaskIsSet(raw_event->valuators.mask, VALUATOR_TILTY)) {
							HashMap<int, Vector2>::Iterator pen_tilt_y = xi.pen_tilt_y_range.find(device_id);
							if (pen_tilt_y) {
								Vector2 pen_tilt_y_range = pen_tilt_y->value;
								if (pen_tilt_y_range[0] != 0 && *values < 0) {
									xi.tilt.y = *values / -pen_tilt_y_range[0];
								} else if (pen_tilt_y_range[1] != 0) {
									xi.tilt.y = *values / pen_tilt_y_range[1];
								}
							}
							values++;
						}
						HashMap<int, bool>::Iterator pen_inverted = xi.pen_inverted_devices.find(device_id);
						if (pen_inverted) {
							xi.pen_inverted = pen_inverted->value;
						}
						
						
						if (raw_event->time == xi.last_relative_time && rel_x == xi.relative_motion.x && rel_y == xi.relative_motion.y) {
							break; 
						}
						xi.old_raw_pos.x = xi.raw_pos.x;
						xi.old_raw_pos.y = xi.raw_pos.y;
						xi.raw_pos.x = rel_x;
						xi.raw_pos.y = rel_y;