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### Environment

* Dubbo version: 3.1.1
* Operating System version: xxx
* Java version: xxx

### Steps to reproduce this issue

1. xxx
2. xxx
3. xxx

Pls. provide [GitHub address] to reproduce this issue.

### Expected Behavior

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### Actual Behavior

![image](https://user-images.githubusercontent.com/9292748/209817200-def8712e-1992-4cc6-987c-d872d89a493c.png)

配置一个应用级配置，有三个接口，但是最后元数据刷新的却只有一个接口，另外两个接口的timeout 还是不变，重启后才变
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If there is an exception, please attach the exception trace:

```
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```

import static org.apache.dubbo.registry.Constants.CONFIGURATORS_SUFFIX;
import static org.apache.dubbo.registry.Constants.DEFAULT_REGISTRY_RETRY_PERIOD;
import static org.apache.dubbo.registry.Constants.ENABLE_CONFIGURATION_LISTEN;
import static org.apache.dubbo.registry.Constants.PROVIDER_PROTOCOL;
import static org.apache.dubbo.registry.Constants.REGISTER_IP_KEY;
import static org.apache.dubbo.registry.Constants.REGISTER_KEY;
import static org.apache.dubbo.registry.Constants.REGISTRY_RETRY_PERIOD_KEY;
import static org.apache.dubbo.registry.Constants.SIMPLIFIED_KEY;
import static org.apache.dubbo.remoting.Constants.BIND_IP_KEY;
import static org.apache.dubbo.remoting.Constants.BIND_PORT_KEY;
import static org.apache.dubbo.remoting.Constants.CHECK_KEY;
import static org.apache.dubbo.remoting.Constants.CODEC_KEY;
import static org.apache.dubbo.remoting.Constants.CONNECTIONS_KEY;
import static org.apache.dubbo.remoting.Constants.EXCHANGER_KEY;
import static org.apache.dubbo.remoting.Constants.SERIALIZATION_KEY;
import static org.apache.dubbo.rpc.Constants.DEPRECATED_KEY;
import static org.apache.dubbo.rpc.Constants.GENERIC_KEY;
import static org.apache.dubbo.rpc.Constants.INTERFACES;
import static org.apache.dubbo.rpc.Constants.MOCK_KEY;
import static org.apache.dubbo.rpc.Constants.TOKEN_KEY;
import static org.apache.dubbo.rpc.cluster.Constants.CONSUMER_URL_KEY;
import static org.apache.dubbo.rpc.cluster.Constants.EXPORT_KEY;
import static org.apache.dubbo.rpc.cluster.Constants.REFER_KEY;
import static org.apache.dubbo.rpc.cluster.Constants.WARMUP_KEY;
import static org.apache.dubbo.rpc.cluster.Constants.WEIGHT_KEY;
import static org.apache.dubbo.rpc.model.ScopeModelUtil.getApplicationModel;
/**
 * TODO, replace RegistryProtocol completely in the future.
 */
public class RegistryProtocol implements Protocol, ScopeModelAware {