### Godot version

v4.0.beta.custom_build [96f12040c]

### System information

Windows 11/64, RTX 3070, Vulkan

### Issue description

From beta10 to the current master, depth prepass is broken. 

Alpha
![image](https://user-images.githubusercontent.com/632766/210395481-1eb4a6be-da4e-423f-a169-65a4b08b9411.png)

Depth Prepass
![image](https://user-images.githubusercontent.com/632766/210395511-7bb2058c-0784-46de-a582-c4d911fc8d88.png)

Alpha
![image](https://user-images.githubusercontent.com/632766/210395568-d168d393-6681-488f-b7d7-b1d58e7728ed.png)

Depth Prepass `depth_prepass_alpha`
![image](https://user-images.githubusercontent.com/632766/210395630-c9a11673-52c1-45c2-890d-29d4330f1cda.png)


Depth Prepass Beta 10
![image](https://user-images.githubusercontent.com/632766/210395836-e1c2be64-378c-4bb0-ac81-a3e9b7e7685a.png)


Note that the shadows render fine, as does vertex animation.

I also get a lot of vulkan errors that I don't get in b10. Many repeats of these on load, but not continuous:

```
ERROR: Condition "!named_textures.has(key)" is true. Returning: RID()
   at: get_texture_slice (servers/rendering/renderer_rd/storage_rd/render_scene_buffers_rd.cpp:357)
ERROR: Texture (binding: 0, index 0) is not a valid texture.
   at: (drivers/vulkan/rendering_device_vulkan.cpp:5465)
ERROR: Condition "rid.is_null()" is true. Returning: rid
   at: _allocate_from_uniforms (./servers/rendering/renderer_rd/uniform_set_cache_rd.h:129)
ERROR: Condition "!uniform_set" is true.
   at: compute_list_bind_uniform_set (drivers/vulkan/rendering_device_vulkan.cpp:7807)
ERROR: Uniforms were never supplied for set (0) at the time of drawing, which are required by the pipeline
   at: (drivers/vulkan/rendering_device_vulkan.cpp:8006)
ERROR: Condition "!rt" is true. Returning: RID()
   at: render_target_get_override_depth_slice (servers/rendering/renderer_rd/storage_rd/texture_storage.cpp:2688)

```

I'm bisecting now....

### Steps to reproduce

See MRP. Change alpha on the tree.

### Minimal reproduction project

You can use my demo from #63675
https://github.com/godotengine/godot/files/10256553/test_zorder.zip
scene_state.uniform_buffers[i] = p_render_data->scene_data->create_uniform_buffer();
		}
	}
	p_render_data->scene_data->update_ubo(scene_state.uniform_buffers[p_index], get_debug_draw_mode(), env, reflection_probe_instance, p_render_data->camera_attributes, p_flip_y, p_pancake_shadows, p_screen_size, p_default_bg_color, _render_buffers_get_luminance_multiplier(), p_opaque_render_buffers);
	
	scene_state.ubo.cluster_shift = get_shift_from_power_of_2(p_render_data->cluster_size);
	scene_state.ubo.max_cluster_element_count_div_32 = p_render_data->cluster_max_elements / 32;
	{
		uint32_t cluster_screen_width = (p_screen_size.width - 1) / p_render_data->cluster_size + 1;
		uint32_t cluster_screen_height = (p_screen_size.height - 1) / p_render_data->cluster_size + 1;
		scene_state.ubo.cluster_type_size = cluster_screen_width * cluster_screen_height * (scene_state.ubo.max_cluster_element_count_div_32 + 32);
		scene_state.ubo.cluster_width = cluster_screen_width;
	}
	scene_state.ubo.gi_upscale_for_msaa = false;
	scene_state.ubo.volumetric_fog_enabled = false;
	if (rd.is_valid()) {
		if (rd->get_msaa_3d() != RS::VIEWPORT_MSAA_DISABLED) {
			scene_state.ubo.gi_upscale_for_msaa = true;
		}
		if (rd->has_custom_data(RB_SCOPE_FOG)) {
			Ref<RendererRD::Fog::VolumetricFog> fog = rd->get_custom_data(RB_SCOPE_FOG);
			scene_state.ubo.volumetric_fog_enabled = true;
			float fog_end = fog->length;
			if (fog_end > 0.0) {
				scene_state.ubo.volumetric_fog_inv_length = 1.0 / fog_end;
			} else {
				scene_state.ubo.volumetric_fog_inv_length = 1.0;
			}
			float fog_detail_spread = fog->spread; 
			if (fog_detail_spread > 0.0) {