### Godot version

v4.0.beta17.official [c40020513]

### System information

macOS 13.0.1

### Issue description

When a `Control` node is over a `SubViewportContainer` (with a `SubViewport` as a child), both in Full Rect anchors, asking for the get_viewport().get_mouse_position() from a scene inside the `SubViewport` returns (0, 0) as the position of the mouse.

This wasn't happening in at least Beta 15. I was getting the mouse position without any problems before Beta 17. I didn't try Beta 16.

### Steps to reproduce

1. Create a `Control` node
2. Add two children: A `SubViewportContainer` and a `Control` node
3. Put both in Full Rect anchors so the `Control` node (child) is covering the `SubViewportContainer`
4. Ask for the get_viewport().get_mouse_position() from inside a scene of the `SubViewport`

As you can see in this screenshot: asking for the mouse position from inside the `Node2D` script always returns (0, 0).

<img width="1533" alt="SubViewportContainerIssue" src="https://user-images.githubusercontent.com/91340577/217051768-d9c2e8ad-40ca-4c6d-bb98-f6a7c9c6081f.png">

Only If the `Control` (child) mouse filtering is set to _Ignore_ you can get the mouse position. But with that you are losing the mouse inputs from that `Control` node.

You can find the setup of these nodes in the MRP.


### Minimal reproduction project

Run the main scene (control.tscn) and move the mouse around the screen. Look for the print in the Output tab.

[SubViewportMousePositionIssue.zip](https://github.com/godotengine/godot/files/10667894/SubViewportMousePositionIssue.zip)
panel->set_theme_type_variation(SNAME("TooltipPanel"));
	
	
	Control *base_tooltip = tooltip_owner->make_custom_tooltip(tooltip_text);
	
	if (!base_tooltip) {
		gui.tooltip_label = memnew(Label);
		gui.tooltip_label->set_theme_type_variation(SNAME("TooltipLabel"));
		gui.tooltip_label->set_auto_translate(gui.tooltip_control->is_auto_translating());
		gui.tooltip_label->set_text(tooltip_text);
		base_tooltip = gui.tooltip_label;
		panel->connect("mouse_entered", callable_mp(this, &Viewport::_gui_cancel_tooltip));
	}
	base_tooltip->set_anchors_and_offsets_preset(Control::PRESET_FULL_RECT);
	panel->set_transient(true);
	panel->set_flag(Window::FLAG_NO_FOCUS, true);
	panel->set_flag(Window::FLAG_POPUP, false);
	panel->set_flag(Window::FLAG_MOUSE_PASSTHROUGH, true);
	panel->set_wrap_controls(true);
	panel->add_child(base_tooltip);
	panel->gui_parent = this;
	gui.tooltip_popup = panel;
	tooltip_owner->add_child(gui.tooltip_popup);
	Point2 tooltip_offset = GLOBAL_GET("display/mouse_cursor/tooltip_position_offset");
	Rect2 r(gui.tooltip_pos + tooltip_offset, gui.tooltip_popup->get_contents_minimum_size());
	r.size = r.size.min(panel->get_max_size());
	Window *window = gui.tooltip_popup->get_parent_visible_window();
	Rect2i vr;
	if (gui.tooltip_popup->is_embedded()) {
		vr = gui.tooltip_popup->_get_embedder()->get_visible_rect();