### Godot version

4.0b16

### System information

Windows 11

### Issue description

Godot game (not the editor) crashes by loading a specific ".glb" model via `Godot.GltfDocument.AppendFromFile` (in C#, not tested in GDScript). The model is exported via Blender, and runs on Godot 4.0 Beta 15 without any problems.

```
Fatal error. System.AccessViolationException: Attempted to read or write protected memory. This is often an indication t.
   at Godot.NativeInterop.NativeFuncs.godotsharp_method_bind_ptrcall(IntPtr, IntPtr, Void**, Void*)
   at Godot.NativeCalls.godot_icall_4_467(IntPtr, IntPtr, System.String, IntPtr, UInt32, System.String)
   at Godot.GltfDocument.AppendFromFile(System.String, Godot.GltfState, UInt32, System.String)
   at dummy_scene._Ready()
   at Godot.Node.InvokeGodotClassMethod(Godot.NativeInterop.godot_string_name ByRef, Godot.NativeInterop.NativeVariantPt)
   at Godot.Node3D.InvokeGodotClassMethod(Godot.NativeInterop.godot_string_name ByRef, Godot.NativeInterop.NativeVariant)
   at dummy_scene.InvokeGodotClassMethod(Godot.NativeInterop.godot_string_name ByRef, Godot.NativeInterop.NativeVariantP)
   at Godot.Bridge.CSharpInstanceBridge.Call(IntPtr, Godot.NativeInterop.godot_string_name*, Godot.NativeInterop.godot_v)
```

![image](https://user-images.githubusercontent.com/18738917/215181154-998d84b9-247b-4e8d-a1de-9bf400a1e567.png)


### Steps to reproduce

Run the dummy scene with affected GLTF code. (See MRP.)

### Minimal reproduction project

C# proj [Godot 4 b16 GLTF Crash.zip](https://github.com/godotengine/godot/files/10522482/Godot.4.b16.GLTF.Crash.zip)

GDScript proj [Godot.4.b16.GLTF.Crash.gdscript.zip](https://github.com/godotengine/godot/files/10543553/Godot.4.b16.GLTF.Crash.gdscript.zip)

p_node->replace_by(col);
					memdelete(p_node);
					p_node = col;
					_add_shapes(col, shapes);
				}
			}
		} else if (p_node->has_meta("empty_draw_type")) {
			String empty_draw_type = String(p_node->get_meta("empty_draw_type"));
			StaticBody3D *sb = memnew(StaticBody3D);
			sb->set_name(fixed_name);
			Object::cast_to<Node3D>(sb)->set_transform(Object::cast_to<Node3D>(p_node)->get_transform());
			p_node->replace_by(sb);
			memdelete(p_node);
			p_node = sb;
			CollisionShape3D *colshape = memnew(CollisionShape3D);
			if (empty_draw_type == "CUBE") {
				BoxShape3D *boxShape = memnew(BoxShape3D);
				boxShape->set_size(Vector3(2, 2, 2));
				colshape->set_shape(boxShape);
			} else if (empty_draw_type == "SINGLE_ARROW") {
				SeparationRayShape3D *rayShape = memnew(SeparationRayShape3D);
				rayShape->set_length(1);
				colshape->set_shape(rayShape);
				Object::cast_to<Node3D>(sb)->rotate_x(Math_PI / 2);
			} else if (empty_draw_type == "IMAGE") {
				WorldBoundaryShape3D *world_boundary_shape = memnew(WorldBoundaryShape3D);
				colshape->set_shape(world_boundary_shape);
			} else {
				SphereShape3D *sphereShape = memnew(SphereShape3D);
				sphereShape->set_radius(1);