### Godot version

v4.0.beta17.mono.official [c40020513]

### System information

Windows11,Godot Mobile backend

### Issue description


https://user-images.githubusercontent.com/15378256/216791307-138e2206-f841-42b4-a9b2-b374da97affc.mp4

When selecting different CollisionShape2Ds, only the first selected gizmo is active and can be used even when selecting different   CollisionShape2D

### Steps to reproduce

Same root, 2 or more CollisionShape2Ds.

Minimal reproduction project uploaded, simply run editor and select between the CollisionShape2Ds.

### Minimal reproduction project

[bug1.zip](https://github.com/godotengine/godot/files/10609753/bug1.zip)
_find_and_save_edited_subresources(scene, processed, flags);
	for (int i = 0; i < scene->get_child_count(); i++) {
		Node *n = scene->get_child(i);
		if (n->get_owner() != editor_data.get_edited_scene_root()) {
			continue;
		}
		_save_edited_subresources(n, processed, flags);
	}
}
void EditorNode::_find_node_types(Node *p_node, int &count_2d, int &count_3d) {
	if (p_node->is_class("Viewport") || (p_node != editor_data.get_edited_scene_root() && p_node->get_owner() != editor_data.get_edited_scene_root())) {
		return;
	}
	if (p_node->is_class("CanvasItem")) {
		count_2d++;
	} else if (p_node->is_class("Node3D")) {
		count_3d++;
	}
	for (int i = 0; i < p_node->get_child_count(); i++) {
		_find_node_types(p_node->get_child(i), count_2d, count_3d);
	}
}
void EditorNode::_save_scene_with_preview(String p_file, int p_idx) {