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### Environment

* Dubbo version: 3.1.1
* Operating System version: xxx
* Java version: xxx

### Steps to reproduce this issue

1. xxx
2. xxx
3. xxx

Pls. provide [GitHub address] to reproduce this issue.

### Expected Behavior

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### Actual Behavior

![image](https://user-images.githubusercontent.com/9292748/209817200-def8712e-1992-4cc6-987c-d872d89a493c.png)

配置一个应用级配置，有三个接口，但是最后元数据刷新的却只有一个接口，另外两个接口的timeout 还是不变，重启后才变
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If there is an exception, please attach the exception trace:

```
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```

import static org.apache.dubbo.common.constants.CommonConstants.GROUP_KEY;
import static org.apache.dubbo.common.constants.CommonConstants.HIDE_KEY_PREFIX;
import static org.apache.dubbo.common.constants.CommonConstants.INTERFACE_KEY;
import static org.apache.dubbo.common.constants.CommonConstants.IPV6_KEY;
import static org.apache.dubbo.common.constants.CommonConstants.LOADBALANCE_KEY;
import static org.apache.dubbo.common.constants.CommonConstants.METHODS_KEY;
import static org.apache.dubbo.common.constants.CommonConstants.MONITOR_KEY;
import static org.apache.dubbo.common.constants.CommonConstants.PATH_KEY;
import static org.apache.dubbo.common.constants.CommonConstants.PROTOCOL_KEY;
import static org.apache.dubbo.common.constants.CommonConstants.REGISTRY_PROTOCOL_LISTENER_KEY;
import static org.apache.dubbo.common.constants.CommonConstants.RELEASE_KEY;
import static org.apache.dubbo.common.constants.CommonConstants.SIDE_KEY;
import static org.apache.dubbo.common.constants.CommonConstants.TIMEOUT_KEY;
import static org.apache.dubbo.common.constants.CommonConstants.VERSION_KEY;
import static org.apache.dubbo.common.constants.FilterConstants.VALIDATION_KEY;
import static org.apache.dubbo.common.constants.LoggerCodeConstants.INTERNAL_ERROR;
import static org.apache.dubbo.common.constants.LoggerCodeConstants.REGISTRY_UNSUPPORTED_CATEGORY;
import static org.apache.dubbo.common.constants.QosConstants.ACCEPT_FOREIGN_IP;
import static org.apache.dubbo.common.constants.QosConstants.QOS_ENABLE;
import static org.apache.dubbo.common.constants.QosConstants.QOS_HOST;
import static org.apache.dubbo.common.constants.QosConstants.QOS_PORT;
import static org.apache.dubbo.common.constants.RegistryConstants.ALL_CATEGORIES;
import static org.apache.dubbo.common.constants.RegistryConstants.CATEGORY_KEY;
import static org.apache.dubbo.common.constants.RegistryConstants.CONFIGURATORS_CATEGORY;
import static org.apache.dubbo.common.constants.RegistryConstants.DYNAMIC_KEY;
import static org.apache.dubbo.common.constants.RegistryConstants.OVERRIDE_PROTOCOL;
import static org.apache.dubbo.common.constants.RegistryConstants.REGISTRY_KEY;
import static org.apache.dubbo.common.constants.RegistryConstants.SERVICE_REGISTRY_PROTOCOL;
import static org.apache.dubbo.common.utils.StringUtils.isEmpty;
import static org.apache.dubbo.common.utils.UrlUtils.classifyUrls;