* Electron version: 2.0.0-beta.4
* Operating system: macOS 10.13.3

### Expected behavior

A reload of the window works.

### Actual behavior

A reload of the window does not work.

### How to reproduce

* run VSCode exploration ([download](https://az764295.vo.msecnd.net/exploration/6bc3274250cc949c7fb1d654cbb6e59c8ddad697/VSCode-darwin-exploration.zip))
* run "Reload Window" command
* sometimes I see the window stay blank after doing so and checking the console I see:

```
Uncaught (in promise) Error: Cannot get property 'id' on missing remote object 3
Error: Cannot get property 'id' on missing remote object 3
    at throwRPCError (/Applications/Visual Studio Code - Exploration.app/Contents/Resources/electron.asar/browser/rpc-server.js:143:17)
    at EventEmitter.<anonymous> (/Applications/Visual Studio Code - Exploration.app/Contents/Resources/electron.asar/browser/rpc-server.js:384:7)
    at emitThree (events.js:136:13)
    at EventEmitter.emit (events.js:217:7)
    at WebContents.<anonymous> (/Applications/Visual Studio Code - Exploration.app/Contents/Resources/electron.asar/browser/api/web-contents.js:295:13)
    at emitTwo (events.js:126:13)
    at WebContents.emit (events.js:214:7)
    at throwRPCError (/Applications/Visual Studio Code - Exploration.app/Contents/Resources/electron.asar/browser/rpc-server.js:143:17)
    at EventEmitter.<anonymous> (/Applications/Visual Studio Code - Exploration.app/Contents/Resources/electron.asar/browser/rpc-server.js:384:7)
    at emitThree (events.js:136:13)
    at EventEmitter.emit (events.js:217:7)
    at WebContents.<anonymous> (/Applications/Visual Studio Code - Exploration.app/Contents/Resources/electron.asar/browser/api/web-contents.js:295:13)
    at emitTwo (events.js:126:13)
    at WebContents.emit (events.js:214:7)
    at Object.exception (/Applications/Visual Studio Code - Exploration.app/Contents/Resources/electron.asar/renderer/api/remote.js:209:30)
    at metaToValue (/Applications/Visual Studio Code - Exploration.app/Contents/Resources/electron.asar/renderer/api/remote.js:213:28)
    at Object.descriptor.get [as id] (/Applications/Visual Studio Code - Exploration.app/Contents/Resources/electron.asar/renderer/api/remote.js:132:16)
    at file:///Applications/Visual%20Studio%20Code%20-%20Exploration.app/Contents/Resources/app/out/vs/workbench/electron-browser/bootstrap/index.js:11:97
    at new Promise (<anonymous>)
    at file:///Applications/Visual%20Studio%20Code%20-%20Exploration.app/Contents/Resources/app/out/vs/workbench/electron-browser/bootstrap/index.js:10:838
```
atom/browser/atom_browser_client.cc
site_instance = iter->second;
      is_new_instance = false;
    } else {
      
      
      
      site_instance = content::SiteInstance::Create(
          browser_context);
      site_per_affinities[affinity] = site_instance.get();
    }
  } else {
    site_instance = content::SiteInstance::CreateForURL(
        browser_context,
        url);
  }
  *new_instance = site_instance.get();
  if (is_new_instance) {
    
    
    
    
    content::BrowserThread::PostTask(
        content::BrowserThread::UI, FROM_HERE,
        base::Bind(&Noop, base::RetainedRef(site_instance)));
    
    auto pending_process = site_instance->GetProcess();
    pending_processes_[pending_process->GetID()] = web_contents;
  }
}
void AtomBrowserClient::AppendExtraCommandLineSwitches(