### Describe the issue

Restarting bitcoin, mempool starts filling from scratch.

### Can you reliably reproduce the issue?
#### If so, please list the steps to reproduce below:
1. Wait for mempool to reach for example 3000 transactions
2. Restart bitcoin
3. Watch mempool filling slowly from scratch

### Expected behaviour
Mempool would already contain ~3000 TX on startup

### Actual behaviour
It starts at 0 and fills up slowly with a few per second.

### Screenshots.
http://imgur.com/a/or82d

### What version of bitcoin-core are you using?
Windows x64 0.14rc1 binary from https://bitcoin.org/bin/bitcoin-core-0.14.0/test.rc1/


### Any extra information that might be useful in the debugging process.
I may not be aware of how the mempool.dat thing works and there could just be a misunderstanding.

{
    for (std::set<int>::iterator it = setFilesToPrune.begin(); it != setFilesToPrune.end(); ++it) {
        CDiskBlockPos pos(*it, 0);
        boost::filesystem::remove(GetBlockPosFilename(pos, "blk"));
        boost::filesystem::remove(GetBlockPosFilename(pos, "rev"));
        LogPrintf("Prune: %s deleted blk/rev (%05u)\n", __func__, *it);
    }
}
void FindFilesToPruneManual(std::set<int>& setFilesToPrune, int nManualPruneHeight)
{
    assert(fPruneMode && nManualPruneHeight > 0);
    LOCK2(cs_main, cs_LastBlockFile);
    if (chainActive.Tip() == NULL)
        return;
    
    unsigned int nLastBlockWeCanPrune = std::min((unsigned)nManualPruneHeight, chainActive.Tip()->nHeight - MIN_BLOCKS_TO_KEEP);
    int count=0;
    for (int fileNumber = 0; fileNumber < nLastBlockFile; fileNumber++) {
        if (vinfoBlockFile[fileNumber].nSize == 0 || vinfoBlockFile[fileNumber].nHeightLast > nLastBlockWeCanPrune)
            continue;
        PruneOneBlockFile(fileNumber);
        setFilesToPrune.insert(fileNumber);
        count++;
    }
    LogPrintf("Prune (Manual): prune_height=%d removed %d blk/rev pairs\n", nLastBlockWeCanPrune, count);
}
void PruneBlockFilesManual(int nManualPruneHeight)