Tested in latest Chrome and FF:

If you have multiple PDF files embedded as Iframe (via viewer.html) and at least one of them is password protected, the browser automatically jumps to the (first) iframe that shows the password prompt.

Imho, the iframe shouldn't modify the behavior of it's parent in any way.

See https://support.softcreatr.com/thread/4360-pdf-test/ for a demo.
/* Copyright 2012 Mozilla Foundation
 *
 * Licensed under the Apache License, Version 2.0 (the "License");
 * you may not use this file except in compliance with the License.
 * You may obtain a copy of the License at
 *
 *     http://www.apache.org/licenses/LICENSE-2.0
 *
 * Unless required by applicable law or agreed to in writing, software
 * distributed under the License is distributed on an "AS IS" BASIS,
 * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 * See the License for the specific language governing permissions and
 * limitations under the License.
 */
import {
  animationStarted,
  AutoPrintRegExp,
  DEFAULT_SCALE_VALUE,
  EventBus,
  getActiveOrFocusedElement,
  getPDFFileNameFromURL,
  isValidRotation,
  isValidScrollMode,
  isValidSpreadMode,
  MAX_SCALE,
  MIN_SCALE,
  noContextMenuHandler,
  normalizeWheelEventDirection,
  parseQueryString,