### Describe the issue

Restarting bitcoin, mempool starts filling from scratch.

### Can you reliably reproduce the issue?
#### If so, please list the steps to reproduce below:
1. Wait for mempool to reach for example 3000 transactions
2. Restart bitcoin
3. Watch mempool filling slowly from scratch

### Expected behaviour
Mempool would already contain ~3000 TX on startup

### Actual behaviour
It starts at 0 and fills up slowly with a few per second.

### Screenshots.
http://imgur.com/a/or82d

### What version of bitcoin-core are you using?
Windows x64 0.14rc1 binary from https://bitcoin.org/bin/bitcoin-core-0.14.0/test.rc1/


### Any extra information that might be useful in the debugging process.
I may not be aware of how the mempool.dat thing works and there could just be a misunderstanding.

{
    CValidationState state;
    FlushStateToDisk(state, FLUSH_STATE_NONE, nManualPruneHeight);
}
void FindFilesToPrune(std::set<int>& setFilesToPrune, uint64_t nPruneAfterHeight)
{
    LOCK2(cs_main, cs_LastBlockFile);
    if (chainActive.Tip() == NULL || nPruneTarget == 0) {
        return;
    }
    if ((uint64_t)chainActive.Tip()->nHeight <= nPruneAfterHeight) {
        return;
    }
    unsigned int nLastBlockWeCanPrune = chainActive.Tip()->nHeight - MIN_BLOCKS_TO_KEEP;
    uint64_t nCurrentUsage = CalculateCurrentUsage();
    
    
    
    uint64_t nBuffer = BLOCKFILE_CHUNK_SIZE + UNDOFILE_CHUNK_SIZE;
    uint64_t nBytesToPrune;
    int count=0;
    if (nCurrentUsage + nBuffer >= nPruneTarget) {