### Apache Airflow version

2.7.0

### What happened

On the DAGs page, the All, Active, and Paused counts include deleted DAGs. This is different from <= 2.6.1 (at least), where they were not included in the totals. Specifically this is for DAGs for which the DAG files have been removed, not DAGs that have been deleted via the UI.

### What you think should happen instead

Including deleted DAGs in those counts is confusing, and this behavior should revert to the previous behavior.

### How to reproduce

Create a DAG. 
Wait for totals to increment.
Remove the DAG file.

The totals will not change.

### Operating System

Debian GNU/Linux 11 (bullseye)

### Versions of Apache Airflow Providers

```apache-airflow-providers-amazon==8.5.1
apache-airflow-providers-celery==3.3.2
apache-airflow-providers-cncf-kubernetes==7.4.2
apache-airflow-providers-common-sql==1.7.0
apache-airflow-providers-datadog==3.3.1
apache-airflow-providers-elasticsearch==5.0.0
apache-airflow-providers-ftp==3.5.0
apache-airflow-providers-google==10.6.0
apache-airflow-providers-http==4.5.0
apache-airflow-providers-imap==3.3.0
apache-airflow-providers-microsoft-azure==6.2.4
apache-airflow-providers-postgres==5.6.0
apache-airflow-providers-redis==3.3.1
apache-airflow-providers-salesforce==5.4.1
apache-airflow-providers-slack==7.3.2
apache-airflow-providers-snowflake==4.4.2
apache-airflow-providers-sqlite==3.4.3
```

### Deployment

Astronomer

### Deployment details

_No response_

### Anything else

I suspect the issue is with [DagModel.deactivate_deleted_dags](https://github.com/apache/airflow/blob/f971ba2f2f9703d0e1954e52aaded52a83c2f844/airflow/models/dag.py#L3564), but I'm unable to verify.



### Are you willing to submit PR?

- [ ] Yes I am willing to submit a PR!

### Code of Conduct

- [X] I agree to follow this project's [Code of Conduct](https://github.com/apache/airflow/blob/main/CODE_OF_CONDUCT.md)

"date": dr.date if isinstance(dr.date, str) else dr.date.isoformat(),
                "state": dr.state,
                "count": dr.count,
            }
            for dr in dag_states
        ]
        if dag_states and dag_states[-1].data_interval_start and dag_states[-1].data_interval_end:
            last_automated_data_interval = DataInterval(
                timezone.coerce_datetime(dag_states[-1].data_interval_start),
                timezone.coerce_datetime(dag_states[-1].data_interval_end),
            )
            year = last_automated_data_interval.end.year
            restriction = TimeRestriction(dag.start_date, dag.end_date, False)
            dates: dict[datetime.date, int] = collections.Counter()
            if isinstance(dag.timetable, CronMixin):
                
                dates_iter: Iterator[datetime.datetime | None] = croniter(
                    dag.timetable._expression,
                    start_time=last_automated_data_interval.end,
                    ret_type=datetime.datetime,
                )
                for dt in dates_iter:
                    if dt is None:
                        break
                    if dt.year != year:
                        break
                    if dag.end_date and dt > dag.end_date:
                        break
                    dates[dt.date()] += 1