### Apache Airflow version

2.7.0

### What happened

On the DAGs page, the All, Active, and Paused counts include deleted DAGs. This is different from <= 2.6.1 (at least), where they were not included in the totals. Specifically this is for DAGs for which the DAG files have been removed, not DAGs that have been deleted via the UI.

### What you think should happen instead

Including deleted DAGs in those counts is confusing, and this behavior should revert to the previous behavior.

### How to reproduce

Create a DAG. 
Wait for totals to increment.
Remove the DAG file.

The totals will not change.

### Operating System

Debian GNU/Linux 11 (bullseye)

### Versions of Apache Airflow Providers

```apache-airflow-providers-amazon==8.5.1
apache-airflow-providers-celery==3.3.2
apache-airflow-providers-cncf-kubernetes==7.4.2
apache-airflow-providers-common-sql==1.7.0
apache-airflow-providers-datadog==3.3.1
apache-airflow-providers-elasticsearch==5.0.0
apache-airflow-providers-ftp==3.5.0
apache-airflow-providers-google==10.6.0
apache-airflow-providers-http==4.5.0
apache-airflow-providers-imap==3.3.0
apache-airflow-providers-microsoft-azure==6.2.4
apache-airflow-providers-postgres==5.6.0
apache-airflow-providers-redis==3.3.1
apache-airflow-providers-salesforce==5.4.1
apache-airflow-providers-slack==7.3.2
apache-airflow-providers-snowflake==4.4.2
apache-airflow-providers-sqlite==3.4.3
```

### Deployment

Astronomer

### Deployment details

_No response_

### Anything else

I suspect the issue is with [DagModel.deactivate_deleted_dags](https://github.com/apache/airflow/blob/f971ba2f2f9703d0e1954e52aaded52a83c2f844/airflow/models/dag.py#L3564), but I'm unable to verify.



### Are you willing to submit PR?

- [ ] Yes I am willing to submit a PR!

### Code of Conduct

- [X] I agree to follow this project's [Code of Conduct](https://github.com/apache/airflow/blob/main/CODE_OF_CONDUCT.md)

start = current_page * logs_per_page
        end = start + logs_per_page
        sort_column = Log.__table__.c.get(arg_sorting_key)
        if sort_column is not None:
            if arg_sorting_direction == "desc":
                sort_column = sort_column.desc()
            query = query.order_by(sort_column)
        dag_audit_logs = session.scalars(query.offset(start).limit(logs_per_page)).all()
        return self.render_template(
            "airflow/dag_audit_log.html",
            dag=dag,
            show_trigger_form_if_no_params=conf.getboolean("webserver", "show_trigger_form_if_no_params"),
            dag_model=dag_model,
            root=request.args.get("root"),
            dag_id=dag_id,
            dag_logs=dag_audit_logs,
            num_log_from=min(start + 1, audit_logs_count),
            num_log_to=min(end, audit_logs_count),
            audit_logs_count=audit_logs_count,
            page_size=PAGE_SIZE,
            paging=wwwutils.generate_pages(
                current_page,
                num_of_pages,
                sorting_key=arg_sorting_key if arg_sorting_key else None,
                sorting_direction=arg_sorting_direction if arg_sorting_direction else None,
            ),
            sorting_key=arg_sorting_key,
            sorting_direction=arg_sorting_direction,
        )
class ConfigurationView(AirflowBaseView):