### Apache Airflow version

2.7.0

### What happened

On the DAGs page, the All, Active, and Paused counts include deleted DAGs. This is different from <= 2.6.1 (at least), where they were not included in the totals. Specifically this is for DAGs for which the DAG files have been removed, not DAGs that have been deleted via the UI.

### What you think should happen instead

Including deleted DAGs in those counts is confusing, and this behavior should revert to the previous behavior.

### How to reproduce

Create a DAG. 
Wait for totals to increment.
Remove the DAG file.

The totals will not change.

### Operating System

Debian GNU/Linux 11 (bullseye)

### Versions of Apache Airflow Providers

```apache-airflow-providers-amazon==8.5.1
apache-airflow-providers-celery==3.3.2
apache-airflow-providers-cncf-kubernetes==7.4.2
apache-airflow-providers-common-sql==1.7.0
apache-airflow-providers-datadog==3.3.1
apache-airflow-providers-elasticsearch==5.0.0
apache-airflow-providers-ftp==3.5.0
apache-airflow-providers-google==10.6.0
apache-airflow-providers-http==4.5.0
apache-airflow-providers-imap==3.3.0
apache-airflow-providers-microsoft-azure==6.2.4
apache-airflow-providers-postgres==5.6.0
apache-airflow-providers-redis==3.3.1
apache-airflow-providers-salesforce==5.4.1
apache-airflow-providers-slack==7.3.2
apache-airflow-providers-snowflake==4.4.2
apache-airflow-providers-sqlite==3.4.3
```

### Deployment

Astronomer

### Deployment details

_No response_

### Anything else

I suspect the issue is with [DagModel.deactivate_deleted_dags](https://github.com/apache/airflow/blob/f971ba2f2f9703d0e1954e52aaded52a83c2f844/airflow/models/dag.py#L3564), but I'm unable to verify.



### Are you willing to submit PR?

- [ ] Yes I am willing to submit a PR!

### Code of Conduct

- [X] I agree to follow this project's [Code of Conduct](https://github.com/apache/airflow/blob/main/CODE_OF_CONDUCT.md)

root=root,
            dag=dag,
            title=title,
        )
    @expose("/xcom")
    @auth.has_access(
        [
            (permissions.ACTION_CAN_READ, permissions.RESOURCE_DAG),
            (permissions.ACTION_CAN_READ, permissions.RESOURCE_TASK_INSTANCE),
            (permissions.ACTION_CAN_READ, permissions.RESOURCE_XCOM),
        ]
    )
    @action_logging
    @provide_session
    def xcom(self, session: Session = NEW_SESSION):
        """Retrieve XCOM."""
        dag_id = request.args["dag_id"]
        task_id = request.args.get("task_id")
        map_index = request.args.get("map_index", -1, type=int)
        
        
        execution_date = request.args.get("execution_date")
        dttm = _safe_parse_datetime(execution_date)
        form = DateTimeForm(data={"execution_date": dttm})
        root = request.args.get("root", "")
        dag = DagModel.get_dagmodel(dag_id)
        ti = session.scalar(select(TaskInstance).filter_by(dag_id=dag_id, task_id=task_id).limit(1))
        if not ti:
            flash(f"Task [{dag_id}.{task_id}] doesn't seem to exist at the moment", "error")
            return redirect(url_for("Airflow.index"))