**Describe what's wrong**

Get data from #29693.

```
ALTER TABLE hackernews
    ADD COLUMN words Array(LowCardinality(String))
    DEFAULT arraySort(
              arrayDistinct(
                extractAll(
                  lower(
                    decodeXMLComponent(
                      extractTextFromHTML(text))),
                  '\w+')));

ALTER TABLE hackernews MATERIALIZE COLUMN words;

ALTER TABLE hackernews ADD INDEX words_bf (words) TYPE bloom_filter(0.01) GRANULARITY 1;

ALTER TABLE hackernews MATERIALIZE INDEX words_bf;

SELECT * FROM system.merges \G;

...

SELECT count() FROM hackernews WHERE has(words, 'clickhouse');

Code: 49. DB::Exception: Received from localhost:9000. DB::Exception: Got empty stream for SerializationLowCardinality keys.: (while reading column words): (while reading from part /var/lib/clickhouse/store/f43/f4347434-b836-44ba-b434-7434b836f4ba/all_1_2874_5_2884/ from mark 46 with max_rows_to_read = 8192): While executing MergeTreeThread. (LOGICAL_ERROR)
```


**Does it reproduce on recent release?**

master.
{
    auto storage_from_merge_tree_data_part = std::dynamic_pointer_cast<StorageFromMergeTreeDataPart>(storage);
    if (!storage_from_merge_tree_data_part)
        return false;
    return storage_from_merge_tree_data_part->materializeTTLRecalculateOnly();
}
static void validateUpdateColumns(
    const StoragePtr & storage,
    const StorageMetadataPtr & metadata_snapshot, const NameSet & updated_columns,
    const std::unordered_map<String, Names> & column_to_affected_materialized)
{
    NameSet key_columns = getKeyColumns(storage, metadata_snapshot);
    for (const String & column_name : updated_columns)
    {
        auto found = false;
        for (const auto & col : metadata_snapshot->getColumns().getOrdinary())
        {
            if (col.name == column_name)