**Describe what's wrong**

Get data from #29693.

```
ALTER TABLE hackernews
    ADD COLUMN words Array(LowCardinality(String))
    DEFAULT arraySort(
              arrayDistinct(
                extractAll(
                  lower(
                    decodeXMLComponent(
                      extractTextFromHTML(text))),
                  '\w+')));

ALTER TABLE hackernews MATERIALIZE COLUMN words;

ALTER TABLE hackernews ADD INDEX words_bf (words) TYPE bloom_filter(0.01) GRANULARITY 1;

ALTER TABLE hackernews MATERIALIZE INDEX words_bf;

SELECT * FROM system.merges \G;

...

SELECT count() FROM hackernews WHERE has(words, 'clickhouse');

Code: 49. DB::Exception: Received from localhost:9000. DB::Exception: Got empty stream for SerializationLowCardinality keys.: (while reading column words): (while reading from part /var/lib/clickhouse/store/f43/f4347434-b836-44ba-b434-7434b836f4ba/all_1_2874_5_2884/ from mark 46 with max_rows_to_read = 8192): While executing MergeTreeThread. (LOGICAL_ERROR)
```


**Does it reproduce on recent release?**

master.
{
                    if (dependency.kind == ColumnDependency::TTL_EXPRESSION)
                        dependencies.insert(dependency);
                }
                
                auto new_dependencies = metadata_snapshot->getColumnDependencies(new_updated_columns, true);
                for (const auto & dependency : new_dependencies)
                {
                    if (dependency.kind == ColumnDependency::SKIP_INDEX || dependency.kind == ColumnDependency::PROJECTION)
                        dependencies.insert(dependency);
                }
            }
            if (dependencies.empty())
            {
                
                
                dependencies.emplace(all_columns.front().name, ColumnDependency::TTL_EXPRESSION);
            }
        }
        else if (command.type == MutationCommand::READ_COLUMN)
        {
            mutation_kind.set(MutationKind::MUTATE_OTHER);
            if (stages.empty() || !stages.back().column_to_updated.empty())
                stages.emplace_back(context);
            if (stages.size() == 1) 
                stages.emplace_back(context);
            stages.back().column_to_updated.emplace(command.column_name, std::make_shared<ASTIdentifier>(command.column_name));
        }
        else
            throw Exception("Unknown mutation command type: " + DB::toString<int>(command.type), ErrorCodes::UNKNOWN_MUTATION_COMMAND);