**Describe what's wrong**

Get data from #29693.

```
ALTER TABLE hackernews
    ADD COLUMN words Array(LowCardinality(String))
    DEFAULT arraySort(
              arrayDistinct(
                extractAll(
                  lower(
                    decodeXMLComponent(
                      extractTextFromHTML(text))),
                  '\w+')));

ALTER TABLE hackernews MATERIALIZE COLUMN words;

ALTER TABLE hackernews ADD INDEX words_bf (words) TYPE bloom_filter(0.01) GRANULARITY 1;

ALTER TABLE hackernews MATERIALIZE INDEX words_bf;

SELECT * FROM system.merges \G;

...

SELECT count() FROM hackernews WHERE has(words, 'clickhouse');

Code: 49. DB::Exception: Received from localhost:9000. DB::Exception: Got empty stream for SerializationLowCardinality keys.: (while reading column words): (while reading from part /var/lib/clickhouse/store/f43/f4347434-b836-44ba-b434-7434b836f4ba/all_1_2874_5_2884/ from mark 46 with max_rows_to_read = 8192): While executing MergeTreeThread. (LOGICAL_ERROR)
```


**Does it reproduce on recent release?**

master.
{
    NamesAndTypesList all_columns = metadata_snapshot->getColumns().getAllPhysical();
    
    for (size_t i = 0; i < prepared_stages.size(); ++i)
    {
        if (!prepared_stages[i].filters.empty())
        {
            for (const auto & column : all_columns)
                prepared_stages[i].output_columns.insert(column.name);
            continue;
        }
        if (i > 0)
            prepared_stages[i].output_columns = prepared_stages[i - 1].output_columns;
        if (prepared_stages[i].output_columns.size() < all_columns.size())
        {
            for (const auto & kv : prepared_stages[i].column_to_updated)
                prepared_stages[i].output_columns.insert(kv.first);
        }
    }
    
    
    for (size_t i = prepared_stages.size() - 1; i > 0; --i)