**Describe what's wrong**

Get data from #29693.

```
ALTER TABLE hackernews
    ADD COLUMN words Array(LowCardinality(String))
    DEFAULT arraySort(
              arrayDistinct(
                extractAll(
                  lower(
                    decodeXMLComponent(
                      extractTextFromHTML(text))),
                  '\w+')));

ALTER TABLE hackernews MATERIALIZE COLUMN words;

ALTER TABLE hackernews ADD INDEX words_bf (words) TYPE bloom_filter(0.01) GRANULARITY 1;

ALTER TABLE hackernews MATERIALIZE INDEX words_bf;

SELECT * FROM system.merges \G;

...

SELECT count() FROM hackernews WHERE has(words, 'clickhouse');

Code: 49. DB::Exception: Received from localhost:9000. DB::Exception: Got empty stream for SerializationLowCardinality keys.: (while reading column words): (while reading from part /var/lib/clickhouse/store/f43/f4347434-b836-44ba-b434-7434b836f4ba/all_1_2874_5_2884/ from mark 46 with max_rows_to_read = 8192): While executing MergeTreeThread. (LOGICAL_ERROR)
```


**Does it reproduce on recent release?**

master.
{
    NameSet new_updated_columns = updated_columns;
    ColumnDependencies dependencies;
    while (!new_updated_columns.empty())
    {
        auto new_dependencies = metadata_snapshot->getColumnDependencies(new_updated_columns, true);
        new_updated_columns.clear();
        for (const auto & dependency : new_dependencies)
        {
            if (!dependencies.count(dependency))
            {
                dependencies.insert(dependency);
                if (!dependency.isReadOnly())
                    new_updated_columns.insert(dependency.column_name);
            }
        }
    }
    return dependencies;
}
}
bool isStorageTouchedByMutations(