### Godot version

4.1.3

### System information

Linux

### Issue description

I'm trying to make an editor plugin on Rust:

```rust
#[derive(GodotClass)]
#[class(tool, editor_plugin, init, base=EditorPlugin)]
pub struct MyEditorPluginBase {}
```

But due to some limitations, I still have to use GDScript for some specific things.

So I tried to make a subclass of this Rust class:

```gdscript
@tool
class_name MyEditorPlugin
extends MyEditorPluginBase
```

This would work if `MyEditorPluginBase` was a GDScript class, but since it's a GDExtension class in my case, it doesn't work:

> Unable to load addon script from path: 'res://addons/my_addon/my_editor_plugin.gd' Base type is not EditorPlugin.

But it obviously **IS** EditorPlugin!

![godot-editorplugin-docs](https://github.com/godotengine/godot/assets/3236464/4665deeb-30f0-45cd-bfff-56101b9d4875)

![godot-editorplugin](https://github.com/godotengine/godot/assets/3236464/b1b6ecb4-de22-4abd-91a3-e180691f67ee)

If I understand correctly, this behavior is caused by this function, which checks some mysterious "instance base type" instead of real inheritance:

https://github.com/godotengine/godot/blob/fa4a65387ea41506ecc519fc61a06da110dce51c/editor/editor_node.cpp#L3456-L3458

https://github.com/godotengine/godot/blob/fa4a65387ea41506ecc519fc61a06da110dce51c/modules/gdscript/gdscript.cpp#L260-L263

Since the [documentation](https://docs.godotengine.org/en/stable/tutorials/plugins/editor/making_plugins.html#the-script-file) doesn't say that the script must be a **direct** subclass of EditorPlugin (and an indirect subclass works fine in GDScript), I interpret this behavior as a Godot bug.

### Steps to reproduce

See above

### Minimal reproduction project

[gdext_editor_plugin_test.zip](https://github.com/godotengine/godot/files/13451014/gdext_editor_plugin_test.zip)
if (p_idx == 0) { 
		current_menu_option = FILE_EXPORT_MESH_LIBRARY;
		if (!editor_data.get_edited_scene_root()) {
			show_accept(TTR("This operation can't be done without a scene."), TTR("OK"));
			return;
		}
		List<String> extensions;
		Ref<MeshLibrary> ml(memnew(MeshLibrary));
		ResourceSaver::get_recognized_extensions(ml, &extensions);
		file_export_lib->clear_filters();
		for (const String &E : extensions) {
			file_export_lib->add_filter("*." + E);
		}
		file_export_lib->popup_file_dialog();
		file_export_lib->set_title(TTR("Export Mesh Library"));
	} else { 
		if (export_as_menu->get_item_submenu(p_idx).is_empty()) { 
			Callable callback = export_as_menu->get_item_metadata(p_idx);
			Callable::CallError ce;
			Variant result;
			callback.callp(nullptr, 0, result, ce);
			if (ce.error != Callable::CallError::CALL_OK) {
				String err = Variant::get_callable_error_text(callback, nullptr, 0, ce);
				ERR_PRINT("Error calling function from export_as menu: " + err);
			}
		}
	}
}
int EditorNode::_next_unsaved_scene(bool p_valid_filename, int p_start) {