### Godot version

4.2 beta 2

### System information

Pop Os 22.04 lts 12th Gen Intel® Core™ i7-12700H × 20 NVIDIA RTX A2000 8GB 32.0  ram. Tested on Forward+ and Mobile

### Issue description

When painting a tile that is rotated or flipped, it looses its physics layer as demonstrated in this video:  

https://github.com/godotengine/godot/assets/33091666/c10f7325-838f-4112-b90d-0c3d9797d08f

Even though in the video I showed this only happening with one of the tiles, it happens with both of them as long as you rotate or flip it. 

### Steps to reproduce

1. Create a tilemap and a tileset
2. Create a physics layer and set collision_visibility_mode to force show. 
3. Assign just created physics layer to tiles
4. Paint the tiles and use rotate or flip tool. 

### Minimal reproduction project

[TileTest.zip](https://github.com/godotengine/godot/files/13067412/TileTest.zip)
return true;
			} else if (components[1] == "coords_level") {
				for (int i = 0; i < a.size(); i += 2) {
					Array key = a[i];
					Array value = a[i + 1];
					set_coords_level_tile_proxy(key[0], key[1], value[0], value[1]);
				}
				return true;
			} else if (components[1] == "alternative_level") {
				for (int i = 0; i < a.size(); i += 2) {
					Array key = a[i];
					Array value = a[i + 1];
					set_alternative_level_tile_proxy(key[0], key[1], key[2], value[0], value[1], value[2]);
				}
				return true;
			}
			return false;
		} else if (components.size() == 1 && components[0].begins_with("pattern_") && components[0].trim_prefix("pattern_").is_valid_int()) {
			int pattern_index = components[0].trim_prefix("pattern_").to_int();
			for (int i = patterns.size(); i <= pattern_index; i++) {
				add_pattern(p_value);
			}
			return true;
		}
#ifndef DISABLE_DEPRECATED
	}
#endif 
	return false;
}
bool TileSet::_get(const StringName &p_name, Variant &r_ret) const {