### Godot version

4.1.3

### System information

Linux

### Issue description

I'm trying to make an editor plugin on Rust:

```rust
#[derive(GodotClass)]
#[class(tool, editor_plugin, init, base=EditorPlugin)]
pub struct MyEditorPluginBase {}
```

But due to some limitations, I still have to use GDScript for some specific things.

So I tried to make a subclass of this Rust class:

```gdscript
@tool
class_name MyEditorPlugin
extends MyEditorPluginBase
```

This would work if `MyEditorPluginBase` was a GDScript class, but since it's a GDExtension class in my case, it doesn't work:

> Unable to load addon script from path: 'res://addons/my_addon/my_editor_plugin.gd' Base type is not EditorPlugin.

But it obviously **IS** EditorPlugin!

![godot-editorplugin-docs](https://github.com/godotengine/godot/assets/3236464/4665deeb-30f0-45cd-bfff-56101b9d4875)

![godot-editorplugin](https://github.com/godotengine/godot/assets/3236464/b1b6ecb4-de22-4abd-91a3-e180691f67ee)

If I understand correctly, this behavior is caused by this function, which checks some mysterious "instance base type" instead of real inheritance:

https://github.com/godotengine/godot/blob/fa4a65387ea41506ecc519fc61a06da110dce51c/editor/editor_node.cpp#L3456-L3458

https://github.com/godotengine/godot/blob/fa4a65387ea41506ecc519fc61a06da110dce51c/modules/gdscript/gdscript.cpp#L260-L263

Since the [documentation](https://docs.godotengine.org/en/stable/tutorials/plugins/editor/making_plugins.html#the-script-file) doesn't say that the script must be a **direct** subclass of EditorPlugin (and an indirect subclass works fine in GDScript), I interpret this behavior as a Godot bug.

### Steps to reproduce

See above

### Minimal reproduction project

[gdext_editor_plugin_test.zip](https://github.com/godotengine/godot/files/13451014/gdext_editor_plugin_test.zip)
singleton->editor_file_dialogs.insert(p_dialog);
}
void EditorNode::_editor_file_dialog_unregister(EditorFileDialog *p_dialog) {
	singleton->editor_file_dialogs.erase(p_dialog);
}
Vector<EditorNodeInitCallback> EditorNode::_init_callbacks;
void EditorNode::_begin_first_scan() {
	
	
	if (!DisplayServer::get_singleton()->window_can_draw()) {
		OS::get_singleton()->benchmark_begin_measure("editor_scan_and_import");
		EditorFileSystem::get_singleton()->scan();
		return;
	}
	if (!waiting_for_first_scan) {
		return;
	}
	requested_first_scan = true;
}
Error EditorNode::export_preset(const String &p_preset, const String &p_path, bool p_debug, bool p_pack_only) {
	export_defer.preset = p_preset;
	export_defer.path = p_path;
	export_defer.debug = p_debug;
	export_defer.pack_only = p_pack_only;
	cmdline_export_mode = true;
	return OK;
}
bool EditorNode::is_project_exporting() const {