def do_runfn(fn_name, fn_args, cmd_args, parallel, dockerconf, ports=None):
    """"Run a single defined function inside a docker container, returning results.
    """
    dmounts = []
    if cmd_args.get("sample_config"):
        with open(cmd_args["sample_config"]) as in_handle:
            _, dmounts = mounts.update_config(yaml.load(in_handle), cmd_args["fcdir"])
    datadir, fn_args = reconstitute.prep_datadir(cmd_args["pack"], fn_args)
    if "orig_systemconfig" in cmd_args:
        orig_sconfig = _get_system_configfile(cmd_args["orig_systemconfig"], datadir)
        orig_galaxydir = os.path.dirname(orig_sconfig)
        dmounts.append("%s:%s" % (orig_galaxydir, orig_galaxydir))
    work_dir, fn_args, finalizer = reconstitute.prep_workdir(cmd_args["pack"], parallel, fn_args)
    dmounts += mounts.prepare_system(datadir, dockerconf["biodata_dir"])
    reconstitute.prep_systemconfig(datadir, fn_args)
    _, system_mounts = _read_system_config(dockerconf, cmd_args["systemconfig"], datadir)

    dmounts.append("%s:%s" % (work_dir, dockerconf["work_dir"]))
    homedir = pwd.getpwuid(os.getuid()).pw_dir
    dmounts.append("%s:%s" % (homedir, homedir))
    all_mounts = dmounts + system_mounts

    argfile = os.path.join(work_dir, "runfn-%s-%s.yaml" % (fn_name, uuid.uuid4()))
    with open(argfile, "w") as out_handle:
        yaml.safe_dump(remap.external_to_docker(fn_args, all_mounts),
                       out_handle, default_flow_style=False, allow_unicode=False)
    docker_argfile = os.path.join(dockerconf["work_dir"], os.path.basename(argfile))
    outfile = "%s-out%s" % os.path.splitext(argfile)
    out = None
    manage.run_bcbio_cmd(cmd_args["image"], all_mounts,
                         ["runfn", fn_name, docker_argfile],
                         ports=ports)
    if os.path.exists(outfile):
        with open(outfile) as in_handle:
            out = remap.docker_to_external(yaml.safe_load(in_handle), all_mounts)
    else:
        print("Subprocess in docker container failed")
        sys.exit(1)
    out = finalizer(out)
    for f in [argfile, outfile]:
        if os.path.exists(f):
            os.remove(f)
    return out
dataset/ETHPy150Open chapmanb/bcbio-nextgen-vm/bcbiovm/docker/run.py/do_runfn/original