def rewrite_config_items(self, name, packages):
        if name == 'packages':
          packages += [ 'openssh-server', 'unzip', 'tar', 'sudo', 'openjdk-6-jre']
          packages += [ 'openmpi-bin' ]  # required for MrBayes-MPI
          # if 'bio-linux-mrbayes-multi' in packages:
          #   (Debian version is still not OK)
          #   packages.remove('bio-linux-mrbayes-multi')

        for package in packages:
          env.logger.info("Selected: "+name+" "+package)
        return packages
dataset/ETHPy150Open chapmanb/cloudbiolinux/contrib/flavor/phylogeny/phylogenyflavor.py/PhylogenyFlavor.rewrite_config_items/original