content: FROM continuumio/miniconda3
  ARG DEBIAN_FRONTEND=noninteractive
  LABEL maintainer="tanghaibao@gmail.com"
  
  RUN apt-get update
  RUN apt-get install -y gcc git build-essential
  RUN apt-get install -y python3-dev libxml2-dev libxslt-dev
  RUN apt-get install -y libncurses-dev libcurl4-openssl-dev zlib1g-dev
  RUN apt-get install -y vcftools python3-pip
  RUN apt-get install -y libblas-dev liblapack-dev libatlas-base-dev gfortran
  RUN apt-get install -y wget autoconf libssl-dev
  
  RUN pip install boto3 awscli
  RUN pip install pyfaidx pyliftover
  RUN pip install cython
  RUN pip install pandas
  RUN pip install scipy
  
  # GRABSEEDS dependencies
  # <https://github.com/tanghaibao/jcvi/wiki/GRABSEEDS%3A-How-to-install>
  RUN apt-get install -y libxft-dev libfreetype6 libfreetype6-dev
  RUN apt-get install -y libmagickwand-dev
  RUN apt-get install -y texlive texlive-latex-extra texlive-latex-recommended cm-super
  RUN apt-get install -y dvipng
  
  RUN pip install matplotlib scikit-image pypdf2 wand Pillow
  
  # https://github.com/tanghaibao/jcvi/issues/307
  RUN apt install curl
  
  # Install jcvi
  # https://github.com/tanghaibao/jcvi/issues/509
  RUN pip install jcvi
  WORKDIR /
  