content: /*************************************************************************
  *                                                                        *
  *  This file is part of the 20n/act project.                             *
  *  20n/act enables DNA prediction for synthetic biology/bioengineering.  *
  *  Copyright (C) 2017 20n Labs, Inc.                                     *
  *                                                                        *
  *  Please direct all queries to act@20n.com.                             *
  *                                                                        *
  *  This program is free software: you can redistribute it and/or modify  *
  *  it under the terms of the GNU General Public License as published by  *
  *  the Free Software Foundation, either version 3 of the License, or     *
  *  (at your option) any later version.                                   *
  *                                                                        *
  *  This program is distributed in the hope that it will be useful,       *
  *  but WITHOUT ANY WARRANTY; without even the implied warranty of        *
  *  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the         *
  *  GNU General Public License for more details.                          *
  *                                                                        *
  *  You should have received a copy of the GNU General Public License     *
  *  along with this program.  If not, see <http://www.gnu.org/licenses/>. *
  *                                                                        *
  *************************************************************************/
  
  #if (${PACKAGE_NAME} && ${PACKAGE_NAME} != "") package ${PACKAGE_NAME};#end
  
  import org.apache.commons.cli.CommandLine;
  import org.apache.commons.cli.CommandLineParser;
  import org.apache.commons.cli.DefaultParser;
  import org.apache.commons.cli.HelpFormatter;
  import org.apache.commons.cli.Option;
  import org.apache.commons.cli.Options;
  import org.apache.commons.cli.ParseException;
  import org.apache.commons.lang.StringUtils;
  import org.apache.logging.log4j.LogManager;
  import org.apache.logging.log4j.Logger;
  
  import java.util.ArrayList;
  import java.util.List;
  
  public class ${NAME} {
    private static final Logger LOGGER = LogManager.getFormatterLogger(${NAME}.class);
    private static final String OPTION_VAL = "p";
  
    public static final String HELP_MESSAGE = StringUtils.join(new String[]{
        "FILL_OUT ",
        "FILL_OUT"}, "");
  
    public static final List<Option.Builder> OPTION_BUILDERS = new ArrayList<Option.Builder>() {
      {
        add(Option.builder(OPTION_VAL)
            .argName("FILL_OUT")
            .desc("FILL_OUT")
            .hasArg()
            .longOpt("FILL_OUT")
            .required()
        );
      }
    };
  
    public static final HelpFormatter HELP_FORMATTER = new HelpFormatter();
  
    static {
      HELP_FORMATTER.setWidth(100);
    }
  
    public static void main(String[] args) {
      Options opts = new Options();
      for (Option.Builder b : OPTION_BUILDERS) {
        opts.addOption(b.build());
      }
  
      CommandLine cl = null;
      try {
        CommandLineParser parser = new DefaultParser();
        cl = parser.parse(opts, args);
      } catch (ParseException e) {
        LOGGER.error("Argument parsing failed: %s", e.getMessage());
        HELP_FORMATTER.printHelp(${NAME}.class.getCanonicalName(), HELP_MESSAGE, opts, null, true);
        System.exit(1);
      }
  
      if (cl.hasOption("help")) {
        HELP_FORMATTER.printHelp(${NAME}.class.getCanonicalName(), HELP_MESSAGE, opts, null, true);
        System.exit(1);
      }
    }
  }
  