content: /*************************************************************************
  *                                                                        *
  *  This file is part of the 20n/act project.                             *
  *  20n/act enables DNA prediction for synthetic biology/bioengineering.  *
  *  Copyright (C) 2017 20n Labs, Inc.                                     *
  *                                                                        *
  *  Please direct all queries to act@20n.com.                             *
  *                                                                        *
  *  This program is free software: you can redistribute it and/or modify  *
  *  it under the terms of the GNU General Public License as published by  *
  *  the Free Software Foundation, either version 3 of the License, or     *
  *  (at your option) any later version.                                   *
  *                                                                        *
  *  This program is distributed in the hope that it will be useful,       *
  *  but WITHOUT ANY WARRANTY; without even the implied warranty of        *
  *  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the         *
  *  GNU General Public License for more details.                          *
  *                                                                        *
  *  You should have received a copy of the GNU General Public License     *
  *  along with this program.  If not, see <http://www.gnu.org/licenses/>. *
  *                                                                        *
  *************************************************************************/
  
  package com.act.biointerpretation.sars;
  
  import chemaxon.formats.MolExporter;
  import chemaxon.reaction.ReactionException;
  import chemaxon.reaction.Reactor;
  import com.fasterxml.jackson.annotation.JsonIgnore;
  import com.fasterxml.jackson.annotation.JsonProperty;
  
  import java.io.IOException;
  import java.io.Serializable;
  
  public class SerializableReactor implements Serializable {
    private static final long serialVersionUID = 6798168677299741769L;
    private static String SERIALIZATION_FORMAT = "smarts";
  
    @JsonProperty("ro_id")
    private Integer roId;
  
    @JsonIgnore
    private Reactor reactor;
  
    /**
     * For json.
     */
    private SerializableReactor() {
    }
  
    public SerializableReactor(SerializableReactor template) {
      this.roId = template.roId;
      this.reactor = template.reactor;
    }
  
    public SerializableReactor(Reactor reactor, Integer roId) {
      this.reactor = reactor;
      this.roId = roId;
    }
  
    @JsonProperty("reactor_smarts")
    public String getReactorSmarts() throws IOException {
      return MolExporter.exportToFormat(reactor.getReaction(), SERIALIZATION_FORMAT);
    }
  
    @JsonProperty("reactor_smarts")
    private void setReactorSmarts(String smarts) throws ReactionException {
      reactor = new Reactor();
      reactor.setReactionString(smarts);
    }
  
    @JsonIgnore
    public Reactor getReactor() {
      return reactor;
    }
  
    public Integer getRoId() {
      return roId;
    }
  }
  