content: /*************************************************************************
  *                                                                        *
  *  This file is part of the 20n/act project.                             *
  *  20n/act enables DNA prediction for synthetic biology/bioengineering.  *
  *  Copyright (C) 2017 20n Labs, Inc.                                     *
  *                                                                        *
  *  Please direct all queries to act@20n.com.                             *
  *                                                                        *
  *  This program is free software: you can redistribute it and/or modify  *
  *  it under the terms of the GNU General Public License as published by  *
  *  the Free Software Foundation, either version 3 of the License, or     *
  *  (at your option) any later version.                                   *
  *                                                                        *
  *  This program is distributed in the hope that it will be useful,       *
  *  but WITHOUT ANY WARRANTY; without even the implied warranty of        *
  *  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the         *
  *  GNU General Public License for more details.                          *
  *                                                                        *
  *  You should have received a copy of the GNU General Public License     *
  *  along with this program.  If not, see <http://www.gnu.org/licenses/>. *
  *                                                                        *
  *************************************************************************/
  
  package com.act.biointerpretation.sars;
  
  import com.fasterxml.jackson.annotation.JsonProperty;
  
  import java.util.ArrayList;
  import java.util.Collection;
  import java.util.HashSet;
  import java.util.Set;
  
  /**
   * Represents a group of reactions that has been deemed likely explicable by the same SAR.
   * Importantly a ReactionGroup has not yet been characterized by a particular SAR.
   */
  public class ReactionGroup {
  
    @JsonProperty("name")
    private String name;
  
    @JsonProperty("db_name")
    private String dbName;
  
    @JsonProperty("reaction_ids")
    private Set<Long> reactionIds;
  
    /**
     * For JSON.
     */
    private ReactionGroup() {
    }
  
    public ReactionGroup(String name, String dbName) {
      this.name = name;
      this.dbName = dbName;
      reactionIds = new HashSet<>();
    }
  
    public void addReactionId(Long id) {
      reactionIds.add(id);
    }
  
    public Collection<Long> getReactionIds() {
      return new ArrayList(reactionIds);
    }
  
    public String getName() {
      return name;
    }
  
    public String getDbName() {
      return dbName;
    }
  }
  