content: /*************************************************************************
  *                                                                        *
  *  This file is part of the 20n/act project.                             *
  *  20n/act enables DNA prediction for synthetic biology/bioengineering.  *
  *  Copyright (C) 2017 20n Labs, Inc.                                     *
  *                                                                        *
  *  Please direct all queries to act@20n.com.                             *
  *                                                                        *
  *  This program is free software: you can redistribute it and/or modify  *
  *  it under the terms of the GNU General Public License as published by  *
  *  the Free Software Foundation, either version 3 of the License, or     *
  *  (at your option) any later version.                                   *
  *                                                                        *
  *  This program is distributed in the hope that it will be useful,       *
  *  but WITHOUT ANY WARRANTY; without even the implied warranty of        *
  *  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the         *
  *  GNU General Public License for more details.                          *
  *                                                                        *
  *  You should have received a copy of the GNU General Public License     *
  *  along with this program.  If not, see <http://www.gnu.org/licenses/>. *
  *                                                                        *
  *************************************************************************/
  
  package com.act.biointerpretation.desalting;
  
  import com.fasterxml.jackson.annotation.JsonProperty;
  import com.fasterxml.jackson.databind.ObjectMapper;
  
  import java.io.BufferedReader;
  import java.io.File;
  import java.io.FileInputStream;
  import java.io.FileNotFoundException;
  import java.io.IOException;
  import java.io.InputStream;
  import java.io.InputStreamReader;
  import java.util.List;
  
  public class DesaltingROCorpus {
  
    private static final String DESALTER_CONSTANTS_FILE_PATH = "desalter_constants.txt";
    private static final String DESALTING_ROS_FILE_PATH = "desalting_ros.json";
    private final Class INSTANCE_CLASS_LOADER = getClass();
    private static final ObjectMapper OBJECT_MAPPER = new ObjectMapper();
  
    @JsonProperty("title")
    private String title;
  
    @JsonProperty("ros")
    private List<DesaltingRO> ros;
  
    public String getTitle() {
      return title;
    }
  
    public void setTitle(String title) {
      this.title = title;
    }
  
    public List<DesaltingRO> getRos() {
      return ros;
    }
  
    public void setRos(List<DesaltingRO> ros) {
      this.ros = ros;
    }
  
    /**
     * This function returns a corpus Desalting ROs
     * @return DesaltingROCorpus object
     * @throws IOException
     */
    public DesaltingROCorpus getDesaltingROS() throws IOException {
      InputStream desaltingROSStream = INSTANCE_CLASS_LOADER.getResourceAsStream(DESALTING_ROS_FILE_PATH);
      DesaltingROCorpus corpus = OBJECT_MAPPER.readValue(desaltingROSStream, DesaltingROCorpus.class);
      return corpus;
    }
  
    /**
     * This function returns a reader file handle to the list of ROs files
     * @return BufferedReader reader
     * @throws FileNotFoundException
     */
    public BufferedReader getDesalterConstantsReader() throws FileNotFoundException {
      InputStream desalterConstantsStream = INSTANCE_CLASS_LOADER.getResourceAsStream(DESALTER_CONSTANTS_FILE_PATH);
      BufferedReader desaltConstantsReader = new BufferedReader(new InputStreamReader(desalterConstantsStream));
      return desaltConstantsReader;
    }
  }
  