content: /*************************************************************************
  *                                                                        *
  *  This file is part of the 20n/act project.                             *
  *  20n/act enables DNA prediction for synthetic biology/bioengineering.  *
  *  Copyright (C) 2017 20n Labs, Inc.                                     *
  *                                                                        *
  *  Please direct all queries to act@20n.com.                             *
  *                                                                        *
  *  This program is free software: you can redistribute it and/or modify  *
  *  it under the terms of the GNU General Public License as published by  *
  *  the Free Software Foundation, either version 3 of the License, or     *
  *  (at your option) any later version.                                   *
  *                                                                        *
  *  This program is distributed in the hope that it will be useful,       *
  *  but WITHOUT ANY WARRANTY; without even the implied warranty of        *
  *  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the         *
  *  GNU General Public License for more details.                          *
  *                                                                        *
  *  You should have received a copy of the GNU General Public License     *
  *  along with this program.  If not, see <http://www.gnu.org/licenses/>. *
  *                                                                        *
  *************************************************************************/
  
  package com.act.biointerpretation.l2expansion;
  
  import com.fasterxml.jackson.annotation.JsonProperty;
  
  import java.io.Serializable;
  import java.util.ArrayList;
  import java.util.List;
  
  /**
   * Represents one substrate or product prediction in an L2Prediction
   */
  public class L2PredictionChemical implements Serializable {
    private static final long serialVersionUID = -5587683103497903872L;
  
    public static final String NO_NAME = "no_name";
    public static final Long NO_ID = new Long(-1);
  
    @JsonProperty("inchi")
    private String inchi;
  
    @JsonProperty("id")
    private Long id;
  
    @JsonProperty("name")
    private String name;
  
    // Necessary for JSON
    private L2PredictionChemical() {
    }
  
    public L2PredictionChemical(L2PredictionChemical template) {
      this.inchi = template.inchi;
      this.id = template.id;
      this.name = template.name;
    }
  
    public L2PredictionChemical(String inchi) {
      this.inchi = inchi;
      this.id = NO_ID;
      this.name = NO_NAME;
    }
  
    public L2PredictionChemical(String inchi, Long id, String name) {
      this.inchi = inchi;
      this.id = id;
      this.name = name;
    }
  
    public static List<L2PredictionChemical> getPredictionChemicals(List<String> inchis) {
      List<L2PredictionChemical> results = new ArrayList<>();
      for (String inchi : inchis) {
        results.add(new L2PredictionChemical(inchi));
      }
      return results;
    }
  
    public String getInchi() {
      return inchi;
    }
  
    public boolean hasId() {
      return !id.equals(NO_ID);
    }
  
    public Long getId() {
      return id;
    }
  
    public void setId(Long id) {
      this.id = id;
    }
  
    public boolean hasName() {
      return !name.equals(NO_NAME);
    }
  
    public String getName() {
      return name;
    }
  
    public void setName(String name) {
      this.name = name;
    }
  }
  