content: /*
  * Copyright (c) 1997 - 2016
  * Actelion Pharmaceuticals Ltd.
  * Gewerbestrasse 16
  * CH-4123 Allschwil, Switzerland
  *
  * All rights reserved.
  *
  * Redistribution and use in source and binary forms, with or without
  * modification, are permitted provided that the following conditions are met:
  *
  * 1. Redistributions of source code must retain the above copyright notice, this
  *    list of conditions and the following disclaimer.
  * 2. Redistributions in binary form must reproduce the above copyright notice,
  *    this list of conditions and the following disclaimer in the documentation
  *    and/or other materials provided with the distribution.
  * 3. Neither the name of the the copyright holder nor the
  *    names of its contributors may be used to endorse or promote products
  *    derived from this software without specific prior written permission.
  *
  * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
  * ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
  * WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
  * DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
  * ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
  * (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
  * LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
  * ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
  * (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
  * SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
  *
  */
  
  package com.actelion.research.chem.properties.complexity;
  
  import java.io.IOException;
  import java.io.InputStream;
  
  import com.actelion.research.chem.mcs.ListWithIntVec;
  import com.actelion.research.util.datamodel.IntArray;
  
  public class ListWithIntVecIdCode extends ListWithIntVec {
  	
  	private String idcode;
  
  	private int frequency;
  		
  	public ListWithIntVecIdCode(int lengthIntVector) {
  		super(lengthIntVector);
  	}
  	
  	/**
  	 * Flat constructor.
  	 * @param liv
  	 */
  	public ListWithIntVecIdCode(ListWithIntVec liv) {
  		super(liv);
  	}
  	
  	/**
  	 * Deep constructor.
  	 * @param liv
  	 */
  	public ListWithIntVecIdCode(ListWithIntVecIdCode liv) {
  		super(liv);
  		this.idcode = liv.idcode; 
  		this.frequency = liv.frequency; 
  	}
  
  	
  	public void add(ListWithIntVecIdCode liv){
  	
  		addAllBits(liv);
  		
  		frequency += liv.getFrequency();
  	}
  	
  	public String getIdCode() {
  		return idcode;
  	}
  
  	public void setIdcode(String idcode) {
  		this.idcode = idcode;
  	}
  
  	public int getFrequency() {
  		return frequency;
  	}
  
  	public void incrementFrequency() {
  		this.frequency++;
  	}
  	
  	public void setFrequency(int frequency) {
  		this.frequency = frequency;
  	}
  
  	public String toString(){
  		StringBuilder sb = new StringBuilder();
  		
  		sb.append(frequency);
  		sb.append(" ");
  		sb.append(idcode);
  		sb.append(" ");
  		sb.append(super.toString());
  		
  		return sb.toString();
  	}
  
      public static ListWithIntVecIdCode read(InputStream s) throws IOException{
      	
      	String idcode = parseString(s);
      	
      	int frequency = IntArray.parseInteger(s);
      	
      	ListWithIntVec liv = ListWithIntVec.read(s);
      	    	    	
      	ListWithIntVecIdCode livIdCode = new ListWithIntVecIdCode(liv);
      	
      	livIdCode.idcode = idcode;
      	
      	livIdCode.frequency = frequency;
      	    	
      	return livIdCode;
      	
      }
      
      public String write2String() throws IOException{
      	
      	StringBuilder sb = new StringBuilder();
  
      	sb.append(idcode);
      	sb.append("\t");
      	sb.append(frequency);
      	sb.append(" ");
      	
      	sb.append(super.write2String());
      	
      	return sb.toString();
      	
      }
      
      public static String parseString(InputStream s) throws IOException{
      	
      	int i = -1;
      	StringBuilder sb = new StringBuilder();
      	while('\t' != (i=s.read())){
      		sb.append((char)i); 
      	}
      	    	
      	return sb.toString();
      }
  
  }