content: /*
  * Copyright (c) 1997 - 2016
  * Actelion Pharmaceuticals Ltd.
  * Gewerbestrasse 16
  * CH-4123 Allschwil, Switzerland
  *
  * All rights reserved.
  *
  * Redistribution and use in source and binary forms, with or without
  * modification, are permitted provided that the following conditions are met:
  *
  * 1. Redistributions of source code must retain the above copyright notice, this
  *    list of conditions and the following disclaimer.
  * 2. Redistributions in binary form must reproduce the above copyright notice,
  *    this list of conditions and the following disclaimer in the documentation
  *    and/or other materials provided with the distribution.
  * 3. Neither the name of the the copyright holder nor the
  *    names of its contributors may be used to endorse or promote products
  *    derived from this software without specific prior written permission.
  *
  * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
  * ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
  * WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
  * DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
  * ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
  * (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
  * LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
  * ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
  * (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
  * SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
  *
  */
  
  package com.actelion.research.chem.prediction;
  
  import java.io.*;
  import java.nio.charset.StandardCharsets;
  import java.util.ArrayList;
  
  public class IncrementTable {
  	ArrayList<IncrementTableRecord> mRecords;
  
  	protected IncrementTable() {
  		mRecords = new ArrayList<IncrementTableRecord>();
  		}
  
  	protected IncrementTable(String filename) throws Exception {
  		BufferedReader theReader = new BufferedReader(new InputStreamReader(this.getClass().getResourceAsStream(filename), StandardCharsets.UTF_8));
  		mRecords = new ArrayList<IncrementTableRecord>();
  		while (true) {
  			String theLine = theReader.readLine();
  			if (theLine == null)
  				break;
  
  			int tabPosition = theLine.indexOf('\t');
  			if (tabPosition == -1)
  				throw new Exception("line without TAB");
  
  			String idcode = theLine.substring(0, tabPosition);
  			double increment = Double.valueOf(theLine.substring(tabPosition+1)).doubleValue();
  
  			mRecords.add(new IncrementTableRecord(idcode, increment));
  			}
  		theReader.close();
  		}
  
  
  	protected void addElement(String idcode, double increment) {
  		mRecords.add(new IncrementTableRecord(idcode, increment));
  		}
  
  
  	protected int getSize() {
  		return mRecords.size();
  		}
  
  
  	protected String getFragment(int i) {
  		return mRecords.get(i).mIDCode;
  		}
  
  
  	protected double getIncrement(int i) {
  		return mRecords.get(i).mIncrement;
  		}
  	}
  
  
  class IncrementTableRecord {
  	String	mIDCode;
  	double	mIncrement;
  
  	protected IncrementTableRecord(String idcode, double increment) {
  		mIDCode = idcode;
  		mIncrement = increment;
  		}
  	}