content: /*
   * Copyright (c) 1997 - 2016
   * Actelion Pharmaceuticals Ltd.
   * Gewerbestrasse 16
   * CH-4123 Allschwil, Switzerland
   *
   * All rights reserved.
   *
   * Redistribution and use in source and binary forms, with or without
   * modification, are permitted provided that the following conditions are met:
   *
   * 1. Redistributions of source code must retain the above copyright notice, this
   *    list of conditions and the following disclaimer.
   * 2. Redistributions in binary form must reproduce the above copyright notice,
   *    this list of conditions and the following disclaimer in the documentation
   *    and/or other materials provided with the distribution.
   * 3. Neither the name of the the copyright holder nor the
   *    names of its contributors may be used to endorse or promote products
   *    derived from this software without specific prior written permission.
   *
   * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
   * ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
   * WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
   * DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
   * ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
   * (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
   * LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
   * ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
   * (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
   * SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
   *
   * @author Modest v. Korff
   */
  
  package com.actelion.research.chem.io.pdb.parser;
  
  import java.util.HashMap;
  import java.util.List;
  
  /**
   * HetNameParser
   * Created by korffmo1 on 10.04.18.
   */
  public class HetNameParser {
  
      private int indexLine;
  
      private HashMap<String, String> hmId_Name;
  
      void parse(List<String> liRaw, int indexLine) {
  
          hmId_Name = new HashMap<>();
  
          String tag = PDBFileParser.TAG_HETNAM;
  
          String l0 = liRaw.get(indexLine);
          if(!l0.startsWith(tag)) {
              throw new RuntimeException("Error in parsing " + tag);
          }
  
          StringBuilder sb = new StringBuilder();
  
          int start = indexLine;
  
          String nameId = l0.substring(11, 14);
  
          for (int i = start; i < liRaw.size(); i++) {
  
              String l = liRaw.get(i);
  
              if(!l.startsWith(tag)) {
                  break;
              }
  
              String nameIdLine = l.substring(11, 14);
  
              if(!nameId.equals(nameIdLine)) {
  
                  String name = sb.toString();
  
                  hmId_Name.put(nameId, name);
  
                  nameId = nameIdLine;
  
                  sb = new StringBuilder();
              }
  
              if(sb.length()>0){
                  sb.append(" ");
              }
  
              String nameLine = l.substring(15).trim();
              sb.append(nameLine);
  
              indexLine++;
          }
  
          if(sb.length()>0){
              String name = sb.toString();
  
              hmId_Name.put(nameId, name);
          }
  
          this.indexLine = indexLine;
      }
  
      public int getIndexLine() {
          return indexLine;
      }
  
      public HashMap<String, String> getHMId_Name() {
          return hmId_Name;
      }
  }