content: /*
   * Copyright (c) 1997 - 2022
   * Idorsia Pharmaceuticals Ltd.
   * Hegenheimermattweg 91
   * CH-4123 Allschwil, Switzerland
   *
   * All rights reserved.
   *
   * Redistribution and use in source and binary forms, with or without
   * modification, are permitted provided that the following conditions are met:
   *
   * 1. Redistributions of source code must retain the above copyright notice, this
   *    list of conditions and the following disclaimer.
   * 2. Redistributions in binary form must reproduce the above copyright notice,
   *    this list of conditions and the following disclaimer in the documentation
   *    and/or other materials provided with the distribution.
   * 3. Neither the name of the copyright holder nor the
   *    names of its contributors may be used to endorse or promote products
   *    derived from this software without specific prior written permission.
   *
   * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
   * ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
   * WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
   * DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
   * ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
   * (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
   * LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
   * ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
   * (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
   * SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
   *
   * @author Thomas Sander
   */
  
  package com.actelion.research.chem.reaction;
  
  public class Classification {
  	public static final int MAXINDICES	= 8;		// max number of search strings and masks
  	public static final int INDEXLEN	= 4;		// max length (longs) of entry in index files
  	public static final int MAXFLASH	= 10;
  	public static final int MAXUNITS	= 16;		// max number of unit rxns in query
  	public static final int MAXENDUR	= 10;		// max# of handled unchanging functionalities
  
  	public String mClassName;					// name of main class(es)
  	public String[] mUnitName;					// names of recognized reaction types
  	public int[][][]  mIndex;					// all permutations of all query unit rxns
  	public int[] mEnduringFG;					// class no's of enduring FGs
  	public int[] mClassResult;					// subClass of each unit rxn (only refu)
  	public int[][] mChngGrps;					// changing groups in query
  	public int[][] mFlashMol;					// hilite mol/atom list of
  	public int[][] mFlashAtom;					// unit rxns for retrieve
  	public int[] mEFlashMol;					// hilite mol/atom list of
  	public int[] mEFlashAtom;					// unchanged functionalities
  	public int[] mMainClass;					// mainClass of each unit rxn
  	public int[] mStereoInfo;					// stereo info (if applicable)
  	public int mUnitRxns;						// no of detected unit rxns
  	public int mEnduringFGs;					// #of unchanged functionality
  	public int[] mRearStrandLen;				// rarrangement strand length
  
  	public Classification() {
  		mUnitName = new String[MAXUNITS];
  		mIndex = new int[MAXUNITS][MAXINDICES][INDEXLEN];
  		mEnduringFG = new int[MAXENDUR];
  		mClassResult = new int[MAXUNITS];
  		mChngGrps = new int[MAXUNITS][4];
  		mFlashMol = new int[MAXUNITS][MAXFLASH];
  		mFlashAtom = new int[MAXUNITS][MAXFLASH];
  		mEFlashMol = new int[MAXENDUR+1];
  		mEFlashAtom = new int[MAXENDUR+1];
  		mMainClass = new int[MAXUNITS];
  		mStereoInfo = new int[MAXUNITS];
  		mRearStrandLen = new int[2];
  		}
  	};
  