content: /*
   * The MIT License (MIT)
   *
   * Copyright (c) 2011-2020 Broad Institute, Aiden Lab, Rice University, Baylor College of Medicine
   *
   * Permission is hereby granted, free of charge, to any person obtaining a copy
   * of this software and associated documentation files (the "Software"), to deal
   * in the Software without restriction, including without limitation the rights
   * to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
   * copies of the Software, and to permit persons to whom the Software is
   * furnished to do so, subject to the following conditions:
   *
   * The above copyright notice and this permission notice shall be included in
   * all copies or substantial portions of the Software.
   *
   *  THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
   *  IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
   *  FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
   *  AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
   *  LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
   *  OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
   *  THE SOFTWARE.
   */
  
  package juicebox.track;
  
  import juicebox.data.basics.Chromosome;
  import org.broad.igv.renderer.DataRange;
  import org.broad.igv.track.WindowFunction;
  
  import java.awt.*;
  import java.util.Collection;
  
  /**
   * @author jrobinso
   *         Date: 8/1/13
   *         Time: 7:51 PM
   */
  public interface HiCDataSource {
  
      String getName();
  
      void setName(String text);
  
      Color getPosColor();
  
      void setColor(Color selectedColor);
  
      Color getNegColor();
  
      void setNegColor(Color selectedColor);
  
      DataRange getDataRange();
  
      void setDataRange(DataRange dataRange);
  
      boolean isLog();
  
      HiCDataPoint[] getData(Chromosome chr, int startBin, int endBin, HiCGridAxis gridAxis, double scaleFactor, WindowFunction windowFunction);
  
      Collection<WindowFunction> getAvailableWindowFunctions();
  }
  