content: /*
   * The MIT License (MIT)
   *
   * Copyright (c) 2011-2021 Broad Institute, Aiden Lab, Rice University, Baylor College of Medicine
   *
   * Permission is hereby granted, free of charge, to any person obtaining a copy
   * of this software and associated documentation files (the "Software"), to deal
   * in the Software without restriction, including without limitation the rights
   * to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
   * copies of the Software, and to permit persons to whom the Software is
   * furnished to do so, subject to the following conditions:
   *
   * The above copyright notice and this permission notice shall be included in
   * all copies or substantial portions of the Software.
   *
   *  THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
   *  IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
   *  FITNESS FOR A PARTICULAR PURPOSE AND NON-INFRINGEMENT. IN NO EVENT SHALL THE
   *  AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
   *  LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
   *  OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
   *  THE SOFTWARE.
   */
  
  package juicebox.gui;
  
  import juicebox.mapcolorui.HeatmapRenderer;
  
  import javax.swing.*;
  import javax.swing.border.Border;
  import java.awt.*;
  import java.awt.event.ActionEvent;
  import java.awt.event.ActionListener;
  
  public class PseudoCountEditor extends JDialog {
  
      private static final long serialVersionUID = 9000026;
  
      public PseudoCountEditor(final SuperAdapter superAdapter) {
          super(superAdapter.getMainWindow());
  
          Container contentPane = getContentPane();
          contentPane.setLayout(new BorderLayout());
          Border padding = BorderFactory.createEmptyBorder(20, 20, 5, 20);
  
          setModal(true);
  
          JLabel labelPseudocount = new JLabel("Pseudocount");
          // todo error if called when pearson not loaded yet
          final JTextField textPseudocount = new JTextField("" + HeatmapRenderer.PSEUDO_COUNT);
  
          JPanel box = new JPanel();
          box.setLayout(new GridLayout(0, 2));
          box.add(labelPseudocount);
          box.add(textPseudocount);
  
          JButton updateButton = new JButton("Update Values");
          updateButton.addActionListener(new ActionListener() {
              @Override
              public void actionPerformed(ActionEvent e) {
                  HeatmapRenderer.PSEUDO_COUNT = Float.parseFloat(textPseudocount.getText());
                  superAdapter.refresh();
                  PseudoCountEditor.this.dispose();
              }
          });
          JButton resetButton = new JButton("Reset Values");
          resetButton.addActionListener(new ActionListener() {
              @Override
              public void actionPerformed(ActionEvent e) {
                  HeatmapRenderer.PSEUDO_COUNT = 1f;
                  superAdapter.refresh();
                  PseudoCountEditor.this.dispose();
              }
          });
  
          JPanel buttonPanel = new JPanel();
          buttonPanel.setBorder(padding);
          buttonPanel.setLayout(new GridLayout(0, 2));
          buttonPanel.add(updateButton);
          buttonPanel.add(resetButton);
  
  
          contentPane.add(box, BorderLayout.CENTER);
          contentPane.add(buttonPanel, BorderLayout.PAGE_END);
          box.setBorder(padding);
          pack();
          setLocationRelativeTo(getOwner());
          setVisible(true);
      }
  }
  