content: /*
   * The MIT License (MIT)
   *
   * Copyright (c) 2011-2021 Broad Institute, Aiden Lab, Rice University, Baylor College of Medicine
   *
   * Permission is hereby granted, free of charge, to any person obtaining a copy
   * of this software and associated documentation files (the "Software"), to deal
   * in the Software without restriction, including without limitation the rights
   * to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
   * copies of the Software, and to permit persons to whom the Software is
   * furnished to do so, subject to the following conditions:
   *
   * The above copyright notice and this permission notice shall be included in
   * all copies or substantial portions of the Software.
   *
   *  THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
   *  IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
   *  FITNESS FOR A PARTICULAR PURPOSE AND NON-INFRINGEMENT. IN NO EVENT SHALL THE
   *  AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
   *  LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
   *  OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
   *  THE SOFTWARE.
   */
  
  package juicebox.data.basics;
  import java.util.Objects;
  
  public class Chromosome {
      private final String name;
      private int index;
      private long length = 0;
      
      public Chromosome(int index, String name, long length) {
          this.index = index;
          this.name = name;
          this.length = length;
      }
  
      public int getIndex() {
          return this.index;
      }
  
      public void setIndex(int ii) {
          this.index = ii;
      }
      
      public long getLength() {
          return this.length;
      }
  
      public String getName() {
          return this.name;
      }
  
      public String toString() {
          return this.name;
      }
  
      public boolean equals(Object obj) {
          return obj instanceof Chromosome && ((Chromosome) obj).getIndex() == this.getIndex() && ((Chromosome) obj).getLength() == this.getLength();
      }
  
      public int hashCode() {
          return Objects.hash(this.index, this.length);
      }
  
      public org.broad.igv.feature.Chromosome toIGVChromosome() {
          return new org.broad.igv.feature.Chromosome(index, name, (int) length); // assumed for IGV
      }
  }
  
  