content: /*
   * The MIT License (MIT)
   *
   * Copyright (c) 2011-2020 Broad Institute, Aiden Lab, Rice University, Baylor College of Medicine
   *
   * Permission is hereby granted, free of charge, to any person obtaining a copy
   * of this software and associated documentation files (the "Software"), to deal
   * in the Software without restriction, including without limitation the rights
   * to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
   * copies of the Software, and to permit persons to whom the Software is
   * furnished to do so, subject to the following conditions:
   *
   * The above copyright notice and this permission notice shall be included in
   * all copies or substantial portions of the Software.
   *
   *  THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
   *  IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
   *  FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
   *  AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
   *  LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
   *  OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
   *  THE SOFTWARE.
   */
  
  package juicebox.tools.utils.juicer.arrowhead;
  
  import java.util.ArrayList;
  import java.util.List;
  
  /**
   * Created by muhammadsaadshamim on 7/22/15.
   */
  class CumulativeBlockResults {
  
      private final ArrowheadScoreList cumulativeInternalList;
      private final ArrowheadScoreList cumulativeInternalControl;
      private List<HighScore> cumulativeResults = new ArrayList<>();
  
      public CumulativeBlockResults(int resolution) {
          cumulativeInternalList = new ArrowheadScoreList(resolution);
          cumulativeInternalControl = new ArrowheadScoreList(resolution);
      }
  
  
      public void add(BlockResults blockResults) {
          cumulativeResults.addAll(blockResults.getResults());
          cumulativeInternalControl.addAll(blockResults.getInternalControl());
          cumulativeInternalList.addAll(blockResults.getInternalList());
      }
  
      public ArrowheadScoreList getCumulativeInternalControl() {
          return cumulativeInternalControl;
      }
  
      public List<HighScore> getCumulativeResults() {
          return cumulativeResults;
      }
  
      public void setCumulativeResults(List<HighScore> cumulativeResults) {
          this.cumulativeResults = new ArrayList<>(cumulativeResults);
      }
  
      public ArrowheadScoreList getCumulativeInternalList() {
          return cumulativeInternalList;
      }
  
      public void mergeScores() {
          cumulativeInternalControl.mergeScores();
          cumulativeInternalList.mergeScores();
      }
  
      public void scaleIndicesByResolution(int resolution) {
          for (HighScore hs : cumulativeResults) {
              hs.scaleIndicesByResolution(resolution);
          }
      }
  }
  