content: [project]
  name = "lesionlocator"
  version = "1.0.0"
  requires-python = ">=3.10"
  description = "LesionLocator is a framework for unified segmentation and tracking of lesions."
  readme = "readme.md"
  license = { file = "LICENSE" }
  authors = [
      { name = "Maximilian Rokuss", email = "maximilian.rokuss@dkfz-heidelberg.de"},
      { name = "German Cancer Research Center" }
  ]
  keywords = [
      'deep learning',
      'image segmentation',
      'semantic segmentation',
      'medical image analysis',
      'tumor lesion',
      'tracking',
      'registration'
  ]
  dependencies = [
      "torch>=2.1.2",
      "acvl-utils>=0.2.3,<0.3",  # 0.3 may bring breaking changes. Careful!
      "dynamic-network-architectures>=0.3.1,<0.4",  # 0.3.1 and lower are supported, 0.4 may have breaking changes. Let's be careful here
      "unigradicon>=1.0.3",
      "tqdm",
      "dicom2nifti",
      "scipy",
      "batchgenerators>=0.25.1",
      "numpy>=1.24",
      "scikit-learn",
      "scikit-image>=0.19.3",
      "SimpleITK>=2.2.1",
      "pandas",
      "graphviz",
      'tifffile',
      'requests',
      "nibabel",
      "matplotlib",
      "seaborn",
      "imagecodecs",
      "yacs",
      "batchgeneratorsv2>=0.2",
      "einops",
      "natsort",
      "blosc2>=3.0.0b1"
  ]
  
  [project.urls]
  homepage = "https://github.com/MIC-DKFZ/LesionLocator"
  repository = "https://github.com/MIC-DKFZ/LesionLocator"
  
  [project.scripts]
  LesionLocator_segment = "lesionlocator.inference.lesionlocator_segment:predict_seg_from_prompt"
  LesionLocator_track = "lesionlocator.inference.lesionlocator_segment_and_track:segment_and_track"
  LesionLocator_create_prompt_json = "lesionlocator.utilities.prompt_handling.create_prompt_jsons_from_seg:prompt_jsons"
  
  
  [project.optional-dependencies]
  dev = [
      "black",
      "ruff",
      "pre-commit"
  ]
  
  [build-system]
  requires = ["setuptools>=67.8.0"]
  build-backend = "setuptools.build_meta"
  
  [tool.codespell]
  skip = '.git,*.pdf,*.svg'
  #
  # ignore-words-list = ''
  