content: [build-system]
  requires = ["setuptools>=45", "wheel", "numpy>=2.0"]
  build-backend = "setuptools.build_meta"
  
  [project]
  name = "tskit"
  dynamic = ["version"]
  authors = [
      {name = "Tskit Developers", email = "admin@tskit.dev"},
  ]
  description = "The tree sequence toolkit."
  readme = "README.rst"
  license = {text = "MIT"}
  classifiers = [
      "Programming Language :: C",
      "Programming Language :: Python",
      "Programming Language :: Python :: 3",
      "Programming Language :: Python :: 3.10",
      "Programming Language :: Python :: 3.11",
      "Programming Language :: Python :: 3.12",
      "Programming Language :: Python :: 3.13",
      "Programming Language :: Python :: 3 :: Only",
      "Development Status :: 5 - Production/Stable",
      "Environment :: Other Environment",
      "Intended Audience :: Science/Research",
      "License :: OSI Approved :: MIT License",
      "Operating System :: POSIX",
      "Operating System :: MacOS :: MacOS X",
      "Operating System :: Microsoft :: Windows",
      "Topic :: Scientific/Engineering",
      "Topic :: Scientific/Engineering :: Bio-Informatics",
  ]
  keywords = [
      "population genetics",
      "tree sequence",
      "ancestral recombination graph",
      "evolutionary tree",
      "statistical genetics",
      "phylogenetics",
      "tskit",
  ]
  requires-python = ">=3.10"
  dependencies = [
      "jsonschema>=3.0.0",
      "numpy>=2",
  ]
  
  [project.urls]
  Homepage = "https://tskit.dev/tskit"
  Documentation = "https://tskit.dev/tskit/docs/stable"
  Changelog = "https://tskit.dev/tskit/docs/stable/changelogs.html"
  "Bug Tracker" = "https://github.com/tskit-dev/tskit/issues"
  GitHub = "https://github.com/tskit-dev/tskit/"
  
  [project.scripts]
  tskit = "tskit.cli:tskit_main"
  
  [tool.setuptools]
  packages = ["tskit", "tskit.jit"]
  
  [tool.setuptools.dynamic]
  version = {attr = "tskit._version.tskit_version"}
  
  [project.optional-dependencies]
  test = [
      "biopython==1.85",
      "coverage==7.7.0", 
      "dendropy==5.0.1",
      "kastore==0.3.3",
      "lshmm==0.0.8",
      "msgpack==1.1.0",
      "msprime==1.3.4",
      "networkx==3.2.1",
      "numba==0.61.2",
      "portion==2.6.0",
      "pytest==8.3.5",
      "pytest-cov==6.0.0",
      "pytest-xdist==3.6.1",
      "tszip==0.2.5",
      "xmlunittest==1.0.1",
      "svgwrite==1.4.3",
      "newick==1.10.0",
      "zarr<3",
  ]
  
  docs = [
      "jupyter-book==1.0.4.post1",
      "breathe==4.35.0",
      "sphinx-autodoc-typehints==2.3.0",
      "sphinx-issues==5.0.0",
      "sphinx-argparse==0.5.2",
      "msprime==1.3.3",
      "numba==0.61.2",
      "sphinx-book-theme",
      "pandas==2.2.3",
  ]
  
  dev = [
      "biopython>=1.70",
      "coverage",
      "dendropy",
      "flake8",
      "kastore",
      "lshmm",
      "msgpack",
      "msprime",
      "mypy",
      "networkx",
      "numba",
      "portion",
      "pre-commit",
      "pytest",
      "pytest-cov",
      "pytest-xdist", 
      "setuptools_scm",
      "svgwrite",
      "tszip",
      "xmlunittest",
      "newick",
      "zarr<3",
      "jupyter-book",
      "breathe",
      "sphinx-autodoc-typehints",
      "sphinx-issues",
      "sphinx-argparse",
      "sphinx-book-theme",
      "pandas",
  ]
  
  [tool.pytest.ini_options]
  addopts = "-n 4"
  testpaths = ["tests"]
  