content: [general]
  creation_date = "12/03/2024, 13:24:30"
  model = "conv_lstm_v3"
  
  [model_params]
  size = 384
  kmer_len = 9
  num_out = 2
  stride = 6
  sequence_stride = 1
  
  [modbases]
  mod_bases = ["a"]
  offset = 0
  reverse_signal = false
  base_start_justify = true
  mod_long_names_0 = "6mA"
  chunk_context_0 = 150
  chunk_context_1 = 150
  kmer_context_bases_0 = 4
  kmer_context_bases_1 = 4
  motif = "A"
  motif_offset = 0
  chunk_size = 600
  
  [refinement]
  refine_do_rough_rescale = 1
  refine_kmer_center_idx = 6
  
  [sequence_encoder]
  [[sequence_encoder.sublayers]]
  type = "convolution"
  insize = 36
  size = 16
  winlen = 5
  stride = 1
  padding = 2
  activation = "tanh"
  
  [[sequence_encoder.sublayers]]
  type = "convolution"
  insize = 16
  size = 128
  winlen = 16
  stride = 1
  padding = 8
  activation = "tanh"
  
  
  [signal_encoder]
  [[signal_encoder.sublayers]]
  type = "convolution"
  insize = 1
  size = 4
  winlen = 5
  stride = 1
  padding = 2
  activation = "tanh"
  
  [[signal_encoder.sublayers]]
  type = "convolution"
  insize = 4
  size = 16
  winlen = 5
  stride = 1
  padding = 2
  activation = "tanh"
  
  [[signal_encoder.sublayers]]
  type = "convolution"
  insize = 16
  size = 128
  winlen = 16
  stride = 6
  padding = 8
  activation = "tanh"
  
  [encoder]
  [[encoder.sublayers]]
  type = "convolution"
  insize = 256
  size = 384
  winlen = 5
  stride = 1
  padding = 2
  activation = "tanh"
  
  [[encoder.sublayers]]
  type = "lstm"
  size = 384
  reverse = 0
  
  [[encoder.sublayers]]
  type = "lstm"
  size = 384
  reverse = 1
  
  [[encoder.sublayers]]
  type = "linear"
  in_features = 384
  out_features = 2
  
  
  