content: [package]
  authors = ["Mitchell R. Vollger <mrvollger@gmail.com>"]
  build = "build.rs"                                      # not yet stable enough
  categories = ["command-line-utilities"]
  description = "bioinformatics toolkit in rust"
  edition = "2021"
  homepage = "https://mrvollger.github.io/rustybam/"
  keywords = ["cli", "bam", "paf", "liftover"]
  license = "MIT"
  name = "rustybam"
  readme = "README.md"
  repository = "https://github.com/mrvollger/rustybam"
  version = "0.1.34"
  
  [[bin]]
  name = "rb"
  path = "src/main.rs"
  
  [[bin]]
  name = "rustybam"
  path = "src/main.rs"
  
  [features]
  default = ["deflate_zlib_ng", "snap_default", "libdeflate"]
  
  deflate_rust = ["gzp/deflate_rust", "flate2/rust_backend"]
  deflate_zlib = ["gzp/deflate_zlib", "flate2/zlib", "any_zlib"]
  deflate_zlib_ng = ["gzp/deflate_zlib_ng", "flate2/zlib-ng-compat", "any_zlib"]
  libdeflate = ["gzp/libdeflate"]
  snap_default = ["gzp/snappy_default", "snap", "snappy"]
  
  any_zlib = [] # internal feature flag
  snappy = []   # internal feature flag
  
  [dependencies]
  anyhow = "1.0.71"
  bimap = "0.6.3"
  bio = "1.3"
  bio-types = "1.0"
  linear-map = "1.2.0"
  calm_io = "0.1.1"
  chrono = "0.4.26"
  clap = { version = "3.2.22", features = ["derive"] }
  colored = "2.0.0"
  env_logger = "0.9.0"
  flate2 = { version = "~1", default-features = false }
  gzp = { version = "0.11", default-features = false }
  itertools = "0.10.0"
  lazy_static = "1.4.0"
  log = "0.4.19"
  natord = "1.0.9"
  needletail = "0.5.1"
  num-format = "0.4.4"
  rayon = "1.7"
  niffler = { version = "2.5.0", default-features = false, features = ["gz"] }
  regex = "1.8"
  rust-htslib = "0.44"
  bio-io = "0.3"
  snap = { version = "1.1", optional = true }
  
  [build-dependencies]
  clap = { version = "3.2.22", features = ["derive"] }
  clap_complete = "3.2.5"
  env_logger = "0.9.0"
  log = "0.4.19"
  
  # generated by 'cargo dist init'
  [profile.dist]
  debug = true
  inherits = "release"
  split-debuginfo = "packed"
  
  # Config for 'cargo dist'
  [workspace.metadata.dist]
  # The preferred cargo-dist version to use in CI (Cargo.toml SemVer syntax)
  cargo-dist-version = "0.0.7"
  # The preferred Rust toolchain to use in CI (rustup toolchain syntax)
  rust-toolchain-version = "1.67.1"
  # CI backends to support (see 'cargo dist generate-ci')
  ci = ["github"]
  # The installers to generate for each app
  installers = []
  # Target platforms to build apps for (Rust target-triple syntax)
  targets = [
      "x86_64-unknown-linux-gnu",
      "x86_64-apple-darwin",
      "aarch64-apple-darwin",
  ]
  