content: [tool.poetry]
  name = "phytreeviz"
  version = "0.2.0"
  description = "Simple phylogenetic tree visualization python package"
  authors = ["moshi4"]
  license = "MIT"
  repository = "https://github.com/moshi4/phyTreeViz/"
  readme = "README.md"
  keywords = [
      "bioinformatics",
      "phylogenetics",
      "visualization",
      "matplotlib",
      "phylogenetic-tree",
  ]
  classifiers = [
      "Intended Audience :: Science/Research",
      "Topic :: Scientific/Engineering :: Bio-Informatics",
      "Framework :: Matplotlib",
  ]
  include = ["tests"]
  packages = [{ include = "phytreeviz", from = "src" }]
  
  [tool.poetry.scripts]
  phytreeviz = "phytreeviz.scripts:cli.main"
  
  [tool.pytest.ini_options]
  minversion = "6.0"
  addopts = "--cov=src --tb=line --cov-report=xml --cov-report=term"
  testpaths = ["tests"]
  
  [tool.ruff]
  src = ["src", "tests"]
  line-length = 88
  
  # Lint Rules: https://docs.astral.sh/ruff/rules/
  [tool.ruff.lint]
  select = [
      "F", # pyflakes
      "E", # pycodestyle (Error)
      "W", # pycodestyle (Warning)
      "I", # isort
      "D", # pydocstyle
  ]
  ignore = [
      "D100", # Missing docstring in public module
      "D101", # Missing docstring in public class
      "D104", # Missing docstring in public package
      "D105", # Missing docstring in magic method
      "D205", # 1 blank line required between summary line and description
      "D400", # First line should end with a period
      "D401", # First line should be in imperative mood
      "D403", # First word of the first line should be properly capitalized
      "D415", # First line should end with a period, question mark, or exclamation point
  ]
  
  [tool.ruff.pydocstyle]
  convention = "numpy"
  
  [tool.poetry.dependencies]
  python = "^3.8"
  matplotlib = ">=3.5.3"
  biopython = ">=1.7.9"
  numpy = ">=1.21.1"
  
  [tool.poetry.group.dev.dependencies]
  ruff = ">=0.1.6"
  pytest = ">=7.1.2"
  pytest-cov = ">=4.0.0"
  ipykernel = ">=6.13.0"
  
  [tool.poetry.group.docs.dependencies]
  mkdocs = ">=1.2"
  mkdocstrings = { extras = ["python"], version = ">=0.19.0" }
  mkdocs-jupyter = ">=0.21.0"
  mkdocs-material = ">=8.2"
  black = ">=22.10.0"
  
  [build-system]
  requires = ["poetry-core"]
  build-backend = "poetry.core.masonry.api"
  