content: [project]
  name = "lung-sarg"
  version = "1.0.0"
  authors = [{ name = "Matt McCormick" }]
  dependencies = [
      "dagster-dbt==0.23.16",
      "dagster-duckdb-polars==0.23.16",
      "dagster-duckdb",
      "dagster==1.7.16",
      "datasets",
      "dbt-core",
      "dbt-duckdb",
      "duckdb==1.0.0",
      "huggingface_hub",
      "httpx[http2]",
      "pyarrow",
      "python-slugify",
      "tenacity",
      "itk>=5.4.0,<6",
      "ngff-zarr[itk,dask-image]>=0.8.5,<0.9", "s5cmd>=0.2.0,<0.3",
  ]
  
  requires-python = ">=3.11, <=3.13"
  readme = "README.md"
  license = { text = "MIT" }
  
  [project.urls]
  Homepage = "https://radiogenomics.github.io/lung-sarg/"
  Changelog = "https://github.com/open-radiogenomics/lung-sarg/commits/main/"
  Issues = "https://github.com/open-radiogenomics/lung-sarg/issues"
  CI = "https://github.com/open-radiogenomics/lung-sarg/actions"
  
  [project.optional-dependencies]
  dev = ["dagster-webserver==1.7.16", "ruff"]
  
  [build-system]
  requires = ["setuptools"]
  build-backend = "setuptools.build_meta"
  
  [tool.setuptools]
  packages = ["lung_sarg"]
  
  [tool.setuptools.package-data]
  "lung_sarg" = ["../dbt/**"]
  
  [tool.dagster]
  module_name = "lung_sarg"
  
  [tool.ruff.lint.isort]
  case-sensitive = true
  combine-as-imports = true
  length-sort = true
  
  [tool.pixi.project]
  channels = ["conda-forge"]
  platforms = ["win-64", "linux-64", "osx-64", "osx-arm64"]
  
  [tool.pixi.pypi-dependencies]
  lung-sarg = { path = ".", editable = true }
  
  [tool.pixi.environments]
  default = { solve-group = "default" }
  dev = { features = ["dev"], solve-group = "default" }
  
  [tool.pixi.tasks]
  stage-samples = { cmd = "dagster job execute -j stage_idc_nsclc_radiogenomic_samples -m lung_sarg", description = "Stage IDC NSCLC Radiogenomic Samples" }
  clean = { cmd = "rm -rf data/*.parquet data/*.duckdb dbt/target dbt/dbt_packages dbt/logs", description = "Clean the project artifacts" }
  
  [tool.pixi.feature.dev.tasks]
  dev = { cmd = "dagster dev", description = "Run the development environment" }
  