content: [tool.poetry]
  name = "crocodeel"
  version = "1.0.8"
  description = "CroCoDeEL is a tool that detects cross-sample (aka well-to-well) contamination in shotgun metagenomic data"
  authors = [
      "Lindsay Goulet <lindsay.goulet@inrae.fr>",
      "Florian Plaza Oñate <florian.plaza-onate@inrae.fr>",
      "Edi Prifti <edi.prifti@ird.fr>",
      "Eugeni Belda <eugeni.belda@ird.fr>",
      "Emmanuelle Le Chatelier <emmanuelle.le-chatelier@inrae.fr>",
      "Guillaume Gautreau <guillaume.gautreau@inrae.fr>",
  ]
  license = "GPL-3.0-or-later"
  readme = "README.md"
  keywords = ["Metagenomics"]
  repository = "https://github.com/metagenopolis/CroCoDeEL"
  classifiers = [
      "Environment :: Console",
      "Intended Audience :: Science/Research",
      "Programming Language :: Python :: 3",
      "Operating System :: OS Independent",
      "Topic :: Scientific/Engineering :: Bio-Informatics",
  ]
  packages = [{ include = "crocodeel" }]
  
  
  [tool.poetry.scripts]
  crocodeel = "crocodeel.crocodeel:main"
  
  [tool.poetry.dependencies]
  python = ">=3.12"
  pandas = "^2.2"
  numpy = "^1.26"
  joblib = "^1.4"
  scipy = "^1.13"
  scikit-learn = "~1.3"
  matplotlib = "^3.8"
  tqdm = "^4.66"
  
  [tool.poetry.group.mypy.dependencies]
  mypy = "^1.10"
  pandas-stubs = "^2.2"
  types-tqdm = "^4.66"
  
  [tool.poetry.group.pylint.dependencies]
  pylint = "^3.1"
  
  [build-system]
  requires = ["poetry-core"]
  build-backend = "poetry.core.masonry.api"
  