content: [tool.poetry]
  name = "eugene-tools"
  packages = [{ include = "eugene"}]
  version = "0.1.2"
  description = "Elucidating the Utility of Genomic Elements with Neural Nets"
  authors = ["adamklie <aklie@ucsd.edu>"]
  readme = "README.md"
  
  [tool.poetry.dependencies]
  python = ">=3.9,<3.11"
  seqpro = "^0.1.1"
  seqdata = "^0.1.1"
  seqexplainer = "^0.1.0"
  motifdata = "^0.1.0"
  seqdatasets = "^0.1.0"
  torch = ">=1.12.0"
  pytorch-lightning = "^2.0.0"
  einops = "0.6.1"
  torchinfo = "1.8.0"
  scikit-learn = "1.2.0"
  dask_ml = "2023.3.24"
  tensorboard = "2.11.2"
  matplotlib = "^3.6.2"
  seaborn = "^0.12.0"
  graph-part = "^0.1.2"
  Sphinx = {version = "^6.2.1", extras = ["docs"]}
  sphinx-autobuild = {version = "2021.3.14", extras = ["docs"]}
  sphinx-autodoc-typehints = {version = "^1.21.1", extras = ["docs"]}
  sphinxcontrib-apidoc = {version = "^0.3.0", extras = ["docs"]}
  sphinx-rtd-theme = {version = "^1.2.2", extras = ["docs"]}
  myst-parser = {version = "^2.0.0", extras = ["docs"]}
  nbsphinx = {version = "^0.9.2", extras = ["docs"]}
  pandoc = {version = "^2.3", extras = ["docs"]}
  
  [tool.poetry.extras]
  docs = ["Sphinx", "sphinx-autobuild", "sphinx-autodoc-typehints", "sphinxcontrib-apidoc", "sphinx-rtd-theme", "myst-parser", "nbsphinx", "pandoc"]
  
  [build-system]
  requires = ["poetry-core"]
  build-backend = "poetry.core.masonry.api"
  