Created dataset card
Browse files
README.md
ADDED
|
@@ -0,0 +1,132 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
---
|
| 2 |
+
tags:
|
| 3 |
+
- biology
|
| 4 |
+
- medicine
|
| 5 |
+
- food-allergy
|
| 6 |
+
- immunology
|
| 7 |
+
- drug-discovery
|
| 8 |
+
- clinical-trials
|
| 9 |
+
- genomics
|
| 10 |
+
- proteomics
|
| 11 |
+
- science
|
| 12 |
+
- huggingscience
|
| 13 |
+
- food-allergies
|
| 14 |
+
- allergies
|
| 15 |
+
pretty_name: Awesome Food Allergy Datasets
|
| 16 |
+
configs:
|
| 17 |
+
- config_name: default
|
| 18 |
+
data_files:
|
| 19 |
+
- split: train
|
| 20 |
+
path: data/awesome-food-allergy-datasets.tsv
|
| 21 |
+
dataset_info:
|
| 22 |
+
features:
|
| 23 |
+
- name: Name
|
| 24 |
+
dtype: string
|
| 25 |
+
- name: Category
|
| 26 |
+
dtype: string
|
| 27 |
+
- name: Description
|
| 28 |
+
dtype: string
|
| 29 |
+
- name: Task
|
| 30 |
+
dtype: string
|
| 31 |
+
- name: Data_Type
|
| 32 |
+
dtype: string
|
| 33 |
+
- name: Source
|
| 34 |
+
dtype: string
|
| 35 |
+
- name: Paper link
|
| 36 |
+
dtype: string
|
| 37 |
+
- name: Availability
|
| 38 |
+
dtype: string
|
| 39 |
+
- name: Contact
|
| 40 |
+
dtype: string
|
| 41 |
+
splits:
|
| 42 |
+
- name: train
|
| 43 |
+
num_examples: 72
|
| 44 |
+
download_size: 24576
|
| 45 |
+
dataset_size: 110592
|
| 46 |
+
size_categories: <1K
|
| 47 |
+
license: apache-2.0
|
| 48 |
+
size_categories:
|
| 49 |
+
- n<1K
|
| 50 |
+
---
|
| 51 |
+
|
| 52 |
+
# Awesome Food Allergy Datasets
|
| 53 |
+
|
| 54 |
+
A curated collection of datasets, databases, and computational resources for food allergy research, allergen identification, drug development, and clinical applications.
|
| 55 |
+
|
| 56 |
+
## 🧬 Dataset Description
|
| 57 |
+
|
| 58 |
+
### Dataset Summary
|
| 59 |
+
|
| 60 |
+
Food allergy affects over 220 million people worldwide. This repository serves as the first comprehensive, open collection of AI-ready datasets for food allergy research—spanning clinical trials, immunotherapy, genomics, proteomics, microbiome, and molecular data.
|
| 61 |
+
|
| 62 |
+
This dataset is a **meta-dataset**; it contains a curated list of pointers to various food allergy datasets, including their names, descriptions, data types, and direct links to their sources and corresponding research papers.
|
| 63 |
+
|
| 64 |
+
### Our Goal
|
| 65 |
+
Enable researchers, ML practitioners, and the scientific community to advance AI applications in:
|
| 66 |
+
|
| 67 |
+
- 🏥 **Early Detection & Risk Stratification**
|
| 68 |
+
- 💊 **Drug Design & Immunotherapy Development**
|
| 69 |
+
- 🌿 **Food Engineering & Hypoallergenic Product Development**
|
| 70 |
+
|
| 71 |
+
|
| 72 |
+
## 🎯 Supported Tasks
|
| 73 |
+
|
| 74 |
+
This collection supports a wide range of tasks across different domains of food allergy research:
|
| 75 |
+
|
| 76 |
+
- **Allergen Identification & Prediction**: Identifying and predicting allergenic potential of proteins.
|
| 77 |
+
- **Drug & Immunotherapy Development**: Datasets for designing new drugs, analyzing immunotherapy outcomes, and mapping epitopes.
|
| 78 |
+
- **Patient Management & Clinical Decision Support**: Clinical data to help in patient diagnosis, risk assessment, and management.
|
| 79 |
+
- **Food Product Development & Safety**: Resources for ingredient analysis and developing hypoallergenic food products.
|
| 80 |
+
- **Computational Method Development**: Benchmarking datasets for tasks like drug-target interaction and property prediction.
|
| 81 |
+
- **Cross-Reactivity Analysis**: Datasets to study and predict cross-reactivity between different allergens.
|
| 82 |
+
|
| 83 |
+
|
| 84 |
+
## 🧱 Dataset Structure
|
| 85 |
+
|
| 86 |
+
### Data Instances
|
| 87 |
+
|
| 88 |
+
Each instance in the dataset is a pointer to a specific food allergy resource, providing metadata about it.
|
| 89 |
+
|
| 90 |
+
Example:
|
| 91 |
+
```json
|
| 92 |
+
{
|
| 93 |
+
"Name": "SDAP 2.0",
|
| 94 |
+
"Category": "Drug & Immunotherapy Development",
|
| 95 |
+
"Description": "SDAP is a Web server that integrates a database of allergenic proteins with various computational tools that can assist structural biology studies related to allergens. SDAP is an important tool in the investigation of the cross-reactivity between known allergens, in testing the FAO/WHO allergenicity rules for new proteins, and in predicting the IgE-binding potential of genetically modified food proteins.",
|
| 96 |
+
"Task": "Drug Design, Structural Analysis, Epitope Mapping, Cross-Reactivity Modeling",
|
| 97 |
+
"Data_Type": "Molecular",
|
| 98 |
+
"Source": "https://fermi.utmb.edu/",
|
| 99 |
+
"Paper link": "https://pmc.ncbi.nlm.nih.gov/articles/PMC10509899/",
|
| 100 |
+
"Availability": "Open source",
|
| 101 |
+
"Contact": null
|
| 102 |
+
}
|
| 103 |
+
```
|
| 104 |
+
|
| 105 |
+
|
| 106 |
+
### Data Fields
|
| 107 |
+
|
| 108 |
+
| Field Name | Type | Description |
|
| 109 |
+
|-------------|------|-------------|
|
| 110 |
+
| **Name** | string | The official name of the dataset or resource. |
|
| 111 |
+
| **Category** | string | The primary research area the dataset belongs to (e.g., Drug Development). |
|
| 112 |
+
| **Description** | string | A detailed summary of the dataset's contents and purpose. |
|
| 113 |
+
| **Task** | string | Specific machine learning or research tasks supported by the data. |
|
| 114 |
+
| **Data_Type** | string | The type of data contained (e.g., Molecular, Clinical, Mixed). |
|
| 115 |
+
| **Source** | string | A direct URL to access the dataset or resource. |
|
| 116 |
+
| **Paper link** | string | A URL to the primary research paper or documentation for the dataset. |
|
| 117 |
+
| **Availability** | string | The access status of the dataset (e.g., Open source, Gated). |
|
| 118 |
+
| **Contact** | string | Contact information for the dataset curators, if available. |
|
| 119 |
+
|
| 120 |
+
|
| 121 |
+
## 🧩 Dataset Creation
|
| 122 |
+
|
| 123 |
+
This collection was manually curated by reviewing scientific literature, open data repositories, and clinical trial databases.
|
| 124 |
+
Each entry was selected for its relevance to food allergy research and its potential for use in computational and artificial intelligence applications.
|
| 125 |
+
|
| 126 |
+
The goal was to create a **centralized, comprehensive, and accessible catalog** to accelerate research in the field.
|
| 127 |
+
|
| 128 |
+
## ⚖️ License
|
| 129 |
+
|
| 130 |
+
The dataset collection itself is licensed under the **Apache License 2.0**.
|
| 131 |
+
However, the individual datasets listed within this collection are subject to their own licenses.
|
| 132 |
+
Please consult the **Source** and **Availability** fields for each dataset to determine its specific license and usage terms.
|