Example of the input file format required for GenomeGems. The file must contain data from one single sample, and must not contain a heading line. The file may contain one single chromosome or all chromosomes, but in both cases the user must specify the chromosome for analysis. The data in the file must be separated into columns using tabs, and must contain the first 7 columns: chromosome number, SNP position, consensus nucleotide, SNP nucleotide, score of the SNP, number of reads for each nucleotide, as shown in the figure. The file may include any additional data in the following columns, also separated by tabs.
Ben-Zvi et al. BMC Research Notes 2012 5:338 doi:10.1186/1756-0500-5-338