Hugging Face's logo

Datasets:
longevity-db
/
skeletal-muscle-atlas

Languages:
English
Size:
100K<n<1M
Tags:
longevity
aging
skeletal-muscle
human
single-cell-rna-seq
muscle-aging
License:
Dataset card Files
xet
Community
jkh commited on
Commit
206ff04
·
verified ·
1 Parent(s): c74119f

Upload detailed_structure.json with huggingface_hub

Browse files
Files changed (1) hide show
  1. detailed_structure.json +202 -0
detailed_structure.json ADDED
@@ -0,0 +1,202 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "obsm_keys": [
3
+ "X_scVI",
4
+ "X_umap"
5
+ ],
6
+ "var_columns": [
7
+ "ENSEMBL",
8
+ "SYMBOL",
9
+ "n_cells"
10
+ ],
11
+ "obs_columns": [
12
+ "SampleID",
13
+ "DonorID",
14
+ "Age_group",
15
+ "Age_bin",
16
+ "Sex",
17
+ "batch",
18
+ "10X_version",
19
+ "annotation_level0",
20
+ "annotation_level1",
21
+ "annotation_level2",
22
+ "n_counts",
23
+ "n_genes",
24
+ "percent_mito",
25
+ "percent_ribo",
26
+ "scrublet_score"
27
+ ],
28
+ "annotation_mapping": {
29
+ "annotation_level0": {
30
+ "MF-I": 42052,
31
+ "MF-II": 28558,
32
+ "FB": 27925,
33
+ "MuSC": 20215,
34
+ "SMC": 8049,
35
+ "T-cell": 7385,
36
+ "MF-IIsc(fg)": 7075,
37
+ "MF-Isc(fg)": 5205,
38
+ "Macrophage": 4723,
39
+ "NK-cell": 3725,
40
+ "CapEC": 3361,
41
+ "Specialised MF": 3285,
42
+ "Monocyte": 2990,
43
+ "VenEC": 2839,
44
+ "Pericyte": 2797,
45
+ "ArtEC": 2539,
46
+ "B-cell": 1326,
47
+ "cDC2": 1158,
48
+ "Neutrophil": 975,
49
+ "PnFB": 934,
50
+ "Tenocyte": 864,
51
+ "EnFB": 842,
52
+ "LymphEC": 769,
53
+ "MF-Isn(fg)": 675,
54
+ "Mast": 631,
55
+ "mSchwann": 486,
56
+ "Hyb": 414,
57
+ "B-plasma": 330,
58
+ "MF-IIsn(fg)": 258,
59
+ "Mesothelium": 203,
60
+ "nmSchwann": 183,
61
+ "cDC1": 152,
62
+ "Adipocyte": 137,
63
+ "pDC": 39,
64
+ "Eosinophil": 36,
65
+ "RBC": 26
66
+ },
67
+ "annotation_level1": {
68
+ "MF-I": 42052,
69
+ "MF-II": 28558,
70
+ "FB": 27925,
71
+ "MuSC": 20215,
72
+ "SMC": 8049,
73
+ "MF-IIsc(fg)": 7075,
74
+ "MF-Isc(fg)": 5205,
75
+ "CD4+T": 4755,
76
+ "Macrophage": 4723,
77
+ "CapEC": 3361,
78
+ "CD16+NK": 3259,
79
+ "VenEC": 2839,
80
+ "Pericyte": 2797,
81
+ "CD8+T": 2630,
82
+ "ArtEC": 2539,
83
+ "CD14+Mono": 2494,
84
+ "B-cell": 1326,
85
+ "NMJ_accessory": 1309,
86
+ "cDC2": 1158,
87
+ "Neutrophil": 975,
88
+ "MTJ": 954,
89
+ "PnFB": 934,
90
+ "Tenocyte": 864,
91
+ "EnFB": 842,
92
+ "LymphEC": 769,
93
+ "MF-Isn(fg)": 675,
94
+ "Mast": 631,
95
+ "MF_type-RASA4+": 510,
96
+ "CD16+Mono": 496,
97
+ "mSchwann": 486,
98
+ "CD16-NK": 466,
99
+ "Hyb": 414,
100
+ "NMJ": 406,
101
+ "B-plasma": 330,
102
+ "MF-IIsn(fg)": 258,
103
+ "Mesothelium": 203,
104
+ "nmSchwann": 183,
105
+ "cDC1": 152,
106
+ "Adipocyte": 137,
107
+ "MF_type-MYH8+": 106,
108
+ "pDC": 39,
109
+ "Eosinophil": 36,
110
+ "RBC": 26
111
+ },
112
+ "annotation_level2": {
113
+ "MF-I": 24380,
114
+ "MuSC": 16238,
115
+ "MF-II": 15844,
116
+ "Inter_FB": 15026,
117
+ "I-OTU+TNF+": 10586,
118
+ "II-OTU+TNF+": 9141,
119
+ "Par_FB": 8142,
120
+ "I-FAM": 7086,
121
+ "MF_typeII(fg)": 6885,
122
+ "MF_typeI(fg)": 4859,
123
+ "Adv_FB": 4757,
124
+ "M\u03d5_CD16hi": 4303,
125
+ "CD4+T": 3597,
126
+ "II-FAM": 3573,
127
+ "CD16+NK": 3209,
128
+ "CD14+Mono": 2431,
129
+ "SMC-CCL2+": 2344,
130
+ "SMC-RAMP1+": 2333,
131
+ "SMC": 2321,
132
+ "Vein-CCL2+": 2316,
133
+ "ICAM1+MuSCs": 1970,
134
+ "TNFRSF12A+MuSCs": 1902,
135
+ "Pericyte": 1782,
136
+ "Arteriole": 1708,
137
+ "CD8+T-CRTAM+": 1572,
138
+ "Cap": 1541,
139
+ "NMJ_accessory": 1309,
140
+ "Cap-Ven": 1181,
141
+ "CD4+CD8+T-naive": 1070,
142
+ "CD8+T": 1058,
143
+ "SMC-PC": 1051,
144
+ "cDC2": 1006,
145
+ "MTJ": 954,
146
+ "Perineural_FB": 934,
147
+ "B_naive": 909,
148
+ "MatNeu": 906,
149
+ "Tenocyte": 864,
150
+ "MF-Isn(fg)": 675,
151
+ "Cap-CCL2+": 639,
152
+ "Mast_cell": 631,
153
+ "Vein": 523,
154
+ "MF_type-RASA4+": 510,
155
+ "CD16+Mono": 496,
156
+ "Endoneural_FB-CDH19+": 487,
157
+ "mSchwann_cell": 486,
158
+ "Vein-Lymph-CD8A+": 466,
159
+ "CD16-NK": 466,
160
+ "Artery": 448,
161
+ "Pericyte-CCL26+": 445,
162
+ "Pericyte-CCL2+": 430,
163
+ "Hyb": 414,
164
+ "NMJ": 406,
165
+ "B_memory": 397,
166
+ "Arteriole-CCL2+": 383,
167
+ "Endoneural_FB-TAC1+": 355,
168
+ "Lymphatic": 303,
169
+ "MF_typeI-UCHL1(fg)": 298,
170
+ "M\u03d5_HLAIIhi": 273,
171
+ "MF-IIsn(fg)": 258,
172
+ "cDC1": 214,
173
+ "B-plasma": 209,
174
+ "Mesothelium": 203,
175
+ "MF_typeII-UCHL1(fg)": 190,
176
+ "nmSchwann_cell": 183,
177
+ "M\u03d5-LAM": 147,
178
+ "mural-CXCL1+": 140,
179
+ "Adipocyte": 137,
180
+ "Cyc_Plasma": 121,
181
+ "MF_type-MYH8+": 106,
182
+ "MYOG+MuSCs": 105,
183
+ "Cyc-cDC2": 90,
184
+ "Cyc-CD14+Mono": 63,
185
+ "CD4+Treg": 56,
186
+ "Cyc-NK": 50,
187
+ "MF_typeI-TNNT2(fg)": 48,
188
+ "PreNeu": 45,
189
+ "pDC": 39,
190
+ "Eosinophil": 36,
191
+ "Cyc-T": 32,
192
+ "RBC": 26,
193
+ "ProNeu": 24,
194
+ "Cyc_B-cell": 20
195
+ }
196
+ },
197
+ "shape": [
198
+ 183161,
199
+ 29400
200
+ ],
201
+ "sparsity": 95.41416311666919
202
+ }