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device token
Browse files- api/services/synthea_integration.py +53 -16
- t_import_endpoints.py +297 -0
api/services/synthea_integration.py
CHANGED
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@@ -181,13 +181,35 @@ class SyntheaIntegrationService:
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patients = []
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try:
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# Find all patient files (excluding hospital and practitioner files)
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-
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f for f in self.output_dir.glob("*.json")
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if not any(x in f.name for x in ["hospitalInformation", "practitionerInformation"])
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]
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logger.info(f"📁 Found {len(patient_files)} patient files")
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for file_path in patient_files:
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try:
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@@ -594,21 +616,36 @@ class SyntheaIntegrationService:
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# Check if Synthea JAR exists
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stats["synthea_available"] = self.synthea_jar_path.exists()
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return stats
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patients = []
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try:
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# Debug: List all files in output directory
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all_files = list(self.output_dir.glob("*"))
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logger.info(f"🔍 All files in output directory: {[f.name for f in all_files]}")
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# Also check for subdirectories (Synthea might create them)
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subdirs = [d for d in self.output_dir.iterdir() if d.is_dir()]
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logger.info(f"📁 Subdirectories found: {[d.name for d in subdirs]}")
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# Find all patient files (excluding hospital and practitioner files)
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# Check both root directory and subdirectories
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patient_files = []
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# Check root directory
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root_files = [
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f for f in self.output_dir.glob("*.json")
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if not any(x in f.name for x in ["hospitalInformation", "practitionerInformation"])
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]
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patient_files.extend(root_files)
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# Check subdirectories
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for subdir in subdirs:
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subdir_files = [
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f for f in subdir.glob("*.json")
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if not any(x in f.name for x in ["hospitalInformation", "practitionerInformation"])
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]
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patient_files.extend(subdir_files)
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logger.info(f"📁 Found {len(patient_files)} patient files")
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logger.info(f"📁 Patient file names: {[f.name for f in patient_files]}")
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for file_path in patient_files:
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try:
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# Check if Synthea JAR exists
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stats["synthea_available"] = self.synthea_jar_path.exists()
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# Only try to count files if output directory exists and is accessible
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if stats["directories_accessible"] and self.output_dir.exists():
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try:
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# Check root directory
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for file_path in self.output_dir.glob("*.json"):
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stats["total_files"] += 1
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stats["total_size_mb"] += file_path.stat().st_size / (1024 * 1024)
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if "hospitalInformation" in file_path.name:
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stats["hospital_files"] += 1
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elif "practitionerInformation" in file_path.name:
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stats["practitioner_files"] += 1
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else:
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stats["patient_files"] += 1
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# Check subdirectories
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for subdir in self.output_dir.iterdir():
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if subdir.is_dir():
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for file_path in subdir.glob("*.json"):
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stats["total_files"] += 1
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stats["total_size_mb"] += file_path.stat().st_size / (1024 * 1024)
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if "hospitalInformation" in file_path.name:
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stats["hospital_files"] += 1
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elif "practitionerInformation" in file_path.name:
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stats["practitioner_files"] += 1
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else:
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stats["patient_files"] += 1
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except Exception as file_error:
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logger.warning(f"⚠️ Error accessing output directory files: {file_error}")
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return stats
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t_import_endpoints.py
CHANGED
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@@ -15,3 +15,300 @@
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y ^Y k ^K ^P * Backward one line (or _N lines).
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f ^F ^V SPACE * Forward one window (or _N lines).
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b ^B ESC-v * Backward one window (or _N lines).
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| 15 |
y ^Y k ^K ^P * Backward one line (or _N lines).
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| 16 |
f ^F ^V SPACE * Forward one window (or _N lines).
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b ^B ESC-v * Backward one window (or _N lines).
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| 18 |
+
z * Forward one window (and set window to _N).
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+
w * Backward one window (and set window to _N).
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+
ESC-SPACE * Forward one window, but don't stop at end-of-file.
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+
d ^D * Forward one half-window (and set half-window to _N).
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+
u ^U * Backward one half-window (and set half-window to _N).
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| 23 |
+
ESC-) RightArrow * Right one half screen width (or _N positions).
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| 24 |
+
ESC-( LeftArrow * Left one half screen width (or _N positions).
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| 25 |
+
ESC-} ^RightArrow Right to last column displayed.
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| 26 |
+
ESC-{ ^LeftArrow Left to first column.
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| 27 |
+
F Forward forever; like "tail -f".
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| 28 |
+
ESC-F Like F but stop when search pattern is found.
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| 29 |
+
r ^R ^L Repaint screen.
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| 30 |
+
R Repaint screen, discarding buffered input.
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+
---------------------------------------------------
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+
Default "window" is the screen height.
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+
Default "half-window" is half of the screen height.
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+
---------------------------------------------------------------------------
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+
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+
SSEEAARRCCHHIINNGG
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+
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| 38 |
+
/_p_a_t_t_e_r_n * Search forward for (_N-th) matching line.
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| 39 |
+
?_p_a_t_t_e_r_n * Search backward for (_N-th) matching line.
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| 40 |
+
n * Repeat previous search (for _N-th occurrence).
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| 41 |
+
N * Repeat previous search in reverse direction.
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| 42 |
+
ESC-n * Repeat previous search, spanning files.
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| 43 |
+
ESC-N * Repeat previous search, reverse dir. & spanning files.
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| 44 |
+
^O^N ^On * Search forward for (_N-th) OSC8 hyperlink.
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| 45 |
+
^O^P ^Op * Search backward for (_N-th) OSC8 hyperlink.
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| 46 |
+
^O^L ^Ol Jump to the currently selected OSC8 hyperlink.
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| 47 |
+
ESC-u Undo (toggle) search highlighting.
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| 48 |
+
ESC-U Clear search highlighting.
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| 49 |
+
&_p_a_t_t_e_r_n * Display only matching lines.
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| 50 |
+
---------------------------------------------------
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| 51 |
+
A search pattern may begin with one or more of:
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+
^N or ! Search for NON-matching lines.
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| 53 |
+
^E or * Search multiple files (pass thru END OF FILE).
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| 54 |
+
^F or @ Start search at FIRST file (for /) or last file (for ?).
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| 55 |
+
^K Highlight matches, but don't move (KEEP position).
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| 56 |
+
^R Don't use REGULAR EXPRESSIONS.
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| 57 |
+
^S _n Search for match in _n-th parenthesized subpattern.
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| 58 |
+
^W WRAP search if no match found.
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| 59 |
+
^L Enter next character literally into pattern.
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| 60 |
+
---------------------------------------------------------------------------
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| 61 |
+
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| 62 |
+
JJUUMMPPIINNGG
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| 63 |
+
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| 64 |
+
g < ESC-< * Go to first line in file (or line _N).
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| 65 |
+
G > ESC-> * Go to last line in file (or line _N).
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| 66 |
+
p % * Go to beginning of file (or _N percent into file).
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| 67 |
+
t * Go to the (_N-th) next tag.
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| 68 |
+
T * Go to the (_N-th) previous tag.
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| 69 |
+
{ ( [ * Find close bracket } ) ].
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} ) ] * Find open bracket { ( [.
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| 71 |
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ESC-^F _<_c_1_> _<_c_2_> * Find close bracket _<_c_2_>.
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| 72 |
+
ESC-^B _<_c_1_> _<_c_2_> * Find open bracket _<_c_1_>.
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| 73 |
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---------------------------------------------------
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| 74 |
+
Each "find close bracket" command goes forward to the close bracket
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| 75 |
+
matching the (_N-th) open bracket in the top line.
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| 76 |
+
Each "find open bracket" command goes backward to the open bracket
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| 77 |
+
matching the (_N-th) close bracket in the bottom line.
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| 78 |
+
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| 79 |
+
m_<_l_e_t_t_e_r_> Mark the current top line with <letter>.
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| 80 |
+
M_<_l_e_t_t_e_r_> Mark the current bottom line with <letter>.
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| 81 |
+
'_<_l_e_t_t_e_r_> Go to a previously marked position.
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| 82 |
+
'' Go to the previous position.
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| 83 |
+
^X^X Same as '.
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| 84 |
+
ESC-m_<_l_e_t_t_e_r_> Clear a mark.
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| 85 |
+
---------------------------------------------------
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| 86 |
+
A mark is any upper-case or lower-case letter.
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| 87 |
+
Certain marks are predefined:
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| 88 |
+
^ means beginning of the file
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| 89 |
+
$ means end of the file
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| 90 |
+
---------------------------------------------------------------------------
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| 91 |
+
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| 92 |
+
CCHHAANNGGIINNGG FFIILLEESS
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| 93 |
+
|
| 94 |
+
:e [_f_i_l_e] Examine a new file.
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| 95 |
+
^X^V Same as :e.
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| 96 |
+
:n * Examine the (_N-th) next file from the command line.
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| 97 |
+
:p * Examine the (_N-th) previous file from the command line.
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| 98 |
+
:x * Examine the first (or _N-th) file from the command line.
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| 99 |
+
^O^O Open the currently selected OSC8 hyperlink.
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| 100 |
+
:d Delete the current file from the command line list.
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| 101 |
+
= ^G :f Print current file name.
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| 102 |
+
---------------------------------------------------------------------------
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| 103 |
+
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| 104 |
+
MMIISSCCEELLLLAANNEEOOUUSS CCOOMMMMAANNDDSS
|
| 105 |
+
|
| 106 |
+
-_<_f_l_a_g_> Toggle a command line option [see OPTIONS below].
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| 107 |
+
--_<_n_a_m_e_> Toggle a command line option, by name.
|
| 108 |
+
__<_f_l_a_g_> Display the setting of a command line option.
|
| 109 |
+
___<_n_a_m_e_> Display the setting of an option, by name.
|
| 110 |
+
+_c_m_d Execute the less cmd each time a new file is examined.
|
| 111 |
+
|
| 112 |
+
!_c_o_m_m_a_n_d Execute the shell command with $SHELL.
|
| 113 |
+
#_c_o_m_m_a_n_d Execute the shell command, expanded like a prompt.
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| 114 |
+
|XX_c_o_m_m_a_n_d Pipe file between current pos & mark XX to shell command.
|
| 115 |
+
s _f_i_l_e Save input to a file.
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| 116 |
+
v Edit the current file with $VISUAL or $EDITOR.
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| 117 |
+
V Print version number of "less".
|
| 118 |
+
---------------------------------------------------------------------------
|
| 119 |
+
|
| 120 |
+
OOPPTTIIOONNSS
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| 121 |
+
|
| 122 |
+
Most options may be changed either on the command line,
|
| 123 |
+
or from within less by using the - or -- command.
|
| 124 |
+
Options may be given in one of two forms: either a single
|
| 125 |
+
character preceded by a -, or a name preceded by --.
|
| 126 |
+
|
| 127 |
+
-? ........ --help
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| 128 |
+
Display help (from command line).
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| 129 |
+
-a ........ --search-skip-screen
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| 130 |
+
Search skips current screen.
|
| 131 |
+
-A ........ --SEARCH-SKIP-SCREEN
|
| 132 |
+
Search starts just after target line.
|
| 133 |
+
-b [_N] .... --buffers=[_N]
|
| 134 |
+
Number of buffers.
|
| 135 |
+
-B ........ --auto-buffers
|
| 136 |
+
Don't automatically allocate buffers for pipes.
|
| 137 |
+
-c ........ --clear-screen
|
| 138 |
+
Repaint by clearing rather than scrolling.
|
| 139 |
+
-d ........ --dumb
|
| 140 |
+
Dumb terminal.
|
| 141 |
+
-D xx_c_o_l_o_r . --color=xx_c_o_l_o_r
|
| 142 |
+
Set screen colors.
|
| 143 |
+
-e -E .... --quit-at-eof --QUIT-AT-EOF
|
| 144 |
+
Quit at end of file.
|
| 145 |
+
-f ........ --force
|
| 146 |
+
Force open non-regular files.
|
| 147 |
+
-F ........ --quit-if-one-screen
|
| 148 |
+
Quit if entire file fits on first screen.
|
| 149 |
+
-g ........ --hilite-search
|
| 150 |
+
Highlight only last match for searches.
|
| 151 |
+
-G ........ --HILITE-SEARCH
|
| 152 |
+
Don't highlight any matches for searches.
|
| 153 |
+
-h [_N] .... --max-back-scroll=[_N]
|
| 154 |
+
Backward scroll limit.
|
| 155 |
+
-i ........ --ignore-case
|
| 156 |
+
Ignore case in searches that do not contain uppercase.
|
| 157 |
+
-I ........ --IGNORE-CASE
|
| 158 |
+
Ignore case in all searches.
|
| 159 |
+
-j [_N] .... --jump-target=[_N]
|
| 160 |
+
Screen position of target lines.
|
| 161 |
+
-J ........ --status-column
|
| 162 |
+
Display a status column at left edge of screen.
|
| 163 |
+
-k _f_i_l_e ... --lesskey-file=_f_i_l_e
|
| 164 |
+
Use a compiled lesskey file.
|
| 165 |
+
-K ........ --quit-on-intr
|
| 166 |
+
Exit less in response to ctrl-C.
|
| 167 |
+
-L ........ --no-lessopen
|
| 168 |
+
Ignore the LESSOPEN environment variable.
|
| 169 |
+
-m -M .... --long-prompt --LONG-PROMPT
|
| 170 |
+
Set prompt style.
|
| 171 |
+
-n ......... --line-numbers
|
| 172 |
+
Suppress line numbers in prompts and messages.
|
| 173 |
+
-N ......... --LINE-NUMBERS
|
| 174 |
+
Display line number at start of each line.
|
| 175 |
+
-o [_f_i_l_e] .. --log-file=[_f_i_l_e]
|
| 176 |
+
Copy to log file (standard input only).
|
| 177 |
+
-O [_f_i_l_e] .. --LOG-FILE=[_f_i_l_e]
|
| 178 |
+
Copy to log file (unconditionally overwrite).
|
| 179 |
+
-p _p_a_t_t_e_r_n . --pattern=[_p_a_t_t_e_r_n]
|
| 180 |
+
Start at pattern (from command line).
|
| 181 |
+
-P [_p_r_o_m_p_t] --prompt=[_p_r_o_m_p_t]
|
| 182 |
+
Define new prompt.
|
| 183 |
+
-q -Q .... --quiet --QUIET --silent --SILENT
|
| 184 |
+
Quiet the terminal bell.
|
| 185 |
+
-r -R .... --raw-control-chars --RAW-CONTROL-CHARS
|
| 186 |
+
Output "raw" control characters.
|
| 187 |
+
-s ........ --squeeze-blank-lines
|
| 188 |
+
Squeeze multiple blank lines.
|
| 189 |
+
-S ........ --chop-long-lines
|
| 190 |
+
Chop (truncate) long lines rather than wrapping.
|
| 191 |
+
-t _t_a_g .... --tag=[_t_a_g]
|
| 192 |
+
Find a tag.
|
| 193 |
+
-T [_t_a_g_s_f_i_l_e] --tag-file=[_t_a_g_s_f_i_l_e]
|
| 194 |
+
Use an alternate tags file.
|
| 195 |
+
-u -U .... --underline-special --UNDERLINE-SPECIAL
|
| 196 |
+
Change handling of backspaces, tabs and carriage returns.
|
| 197 |
+
-V ........ --version
|
| 198 |
+
Display the version number of "less".
|
| 199 |
+
-w ........ --hilite-unread
|
| 200 |
+
Highlight first new line after forward-screen.
|
| 201 |
+
-W ........ --HILITE-UNREAD
|
| 202 |
+
Highlight first new line after any forward movement.
|
| 203 |
+
-x [_N[,...]] --tabs=[_N[,...]]
|
| 204 |
+
Set tab stops.
|
| 205 |
+
-X ........ --no-init
|
| 206 |
+
Don't use termcap init/deinit strings.
|
| 207 |
+
-y [_N] .... --max-forw-scroll=[_N]
|
| 208 |
+
Forward scroll limit.
|
| 209 |
+
-z [_N] .... --window=[_N]
|
| 210 |
+
Set size of window.
|
| 211 |
+
-" [_c[_c]] . --quotes=[_c[_c]]
|
| 212 |
+
Set shell quote characters.
|
| 213 |
+
-~ ........ --tilde
|
| 214 |
+
Don't display tildes after end of file.
|
| 215 |
+
-# [_N] .... --shift=[_N]
|
| 216 |
+
Set horizontal scroll amount (0 = one half screen width).
|
| 217 |
+
|
| 218 |
+
--exit-follow-on-close
|
| 219 |
+
Exit F command on a pipe when writer closes pipe.
|
| 220 |
+
--file-size
|
| 221 |
+
Automatically determine the size of the input file.
|
| 222 |
+
--follow-name
|
| 223 |
+
The F command changes files if the input file is renamed.
|
| 224 |
+
--header=[_L[,_C[,_N]]]
|
| 225 |
+
Use _L lines (starting at line _N) and _C columns as headers.
|
| 226 |
+
--incsearch
|
| 227 |
+
Search file as each pattern character is typed in.
|
| 228 |
+
--intr=[_C]
|
| 229 |
+
Use _C instead of ^X to interrupt a read.
|
| 230 |
+
--lesskey-context=_t_e_x_t
|
| 231 |
+
Use lesskey source file contents.
|
| 232 |
+
--lesskey-src=_f_i_l_e
|
| 233 |
+
Use a lesskey source file.
|
| 234 |
+
--line-num-width=[_N]
|
| 235 |
+
Set the width of the -N line number field to _N characters.
|
| 236 |
+
--match-shift=[_N]
|
| 237 |
+
Show at least _N characters to the left of a search match.
|
| 238 |
+
--modelines=[_N]
|
| 239 |
+
Read _N lines from the input file and look for vim modelines.
|
| 240 |
+
--mouse
|
| 241 |
+
Enable mouse input.
|
| 242 |
+
--no-keypad
|
| 243 |
+
Don't send termcap keypad init/deinit strings.
|
| 244 |
+
--no-histdups
|
| 245 |
+
Remove duplicates from command history.
|
| 246 |
+
--no-number-headers
|
| 247 |
+
Don't give line numbers to header lines.
|
| 248 |
+
--no-search-header-lines
|
| 249 |
+
Searches do not include header lines.
|
| 250 |
+
--no-search-header-columns
|
| 251 |
+
Searches do not include header columns.
|
| 252 |
+
--no-search-headers
|
| 253 |
+
Searches do not include header lines or columns.
|
| 254 |
+
--no-vbell
|
| 255 |
+
Disable the terminal's visual bell.
|
| 256 |
+
--redraw-on-quit
|
| 257 |
+
Redraw final screen when quitting.
|
| 258 |
+
--rscroll=[_C]
|
| 259 |
+
Set the character used to mark truncated lines.
|
| 260 |
+
--save-marks
|
| 261 |
+
Retain marks across invocations of less.
|
| 262 |
+
--search-options=[EFKNRW-]
|
| 263 |
+
Set default options for every search.
|
| 264 |
+
--show-preproc-errors
|
| 265 |
+
Display a message if preprocessor exits with an error status.
|
| 266 |
+
--proc-backspace
|
| 267 |
+
Process backspaces for bold/underline.
|
| 268 |
+
--PROC-BACKSPACE
|
| 269 |
+
Treat backspaces as control characters.
|
| 270 |
+
--proc-return
|
| 271 |
+
Delete carriage returns before newline.
|
| 272 |
+
--PROC-RETURN
|
| 273 |
+
Treat carriage returns as control characters.
|
| 274 |
+
--proc-tab
|
| 275 |
+
Expand tabs to spaces.
|
| 276 |
+
--PROC-TAB
|
| 277 |
+
Treat tabs as control characters.
|
| 278 |
+
--status-col-width=[_N]
|
| 279 |
+
Set the width of the -J status column to _N characters.
|
| 280 |
+
--status-line
|
| 281 |
+
Highlight or color the entire line containing a mark.
|
| 282 |
+
--use-backslash
|
| 283 |
+
Subsequent options use backslash as escape char.
|
| 284 |
+
--use-color
|
| 285 |
+
Enables colored text.
|
| 286 |
+
--wheel-lines=[_N]
|
| 287 |
+
Each click of the mouse wheel moves _N lines.
|
| 288 |
+
--wordwrap
|
| 289 |
+
Wrap lines at spaces.
|
| 290 |
+
|
| 291 |
+
|
| 292 |
+
---------------------------------------------------------------------------
|
| 293 |
+
|
| 294 |
+
LLIINNEE EEDDIITTIINNGG
|
| 295 |
+
|
| 296 |
+
These keys can be used to edit text being entered
|
| 297 |
+
on the "command line" at the bottom of the screen.
|
| 298 |
+
|
| 299 |
+
RightArrow ..................... ESC-l ... Move cursor right one character.
|
| 300 |
+
LeftArrow ...................... ESC-h ... Move cursor left one character.
|
| 301 |
+
ctrl-RightArrow ESC-RightArrow ESC-w ... Move cursor right one word.
|
| 302 |
+
ctrl-LeftArrow ESC-LeftArrow ESC-b ... Move cursor left one word.
|
| 303 |
+
HOME ........................... ESC-0 ... Move cursor to start of line.
|
| 304 |
+
END ............................ ESC-$ ... Move cursor to end of line.
|
| 305 |
+
BACKSPACE ................................ Delete char to left of cursor.
|
| 306 |
+
DELETE ......................... ESC-x ... Delete char under cursor.
|
| 307 |
+
ctrl-BACKSPACE ESC-BACKSPACE ........... Delete word to left of cursor.
|
| 308 |
+
ctrl-DELETE .... ESC-DELETE .... ESC-X ... Delete word under cursor.
|
| 309 |
+
ctrl-U ......... ESC (MS-DOS only) ....... Delete entire line.
|
| 310 |
+
UpArrow ........................ ESC-k ... Retrieve previous command line.
|
| 311 |
+
DownArrow ...................... ESC-j ... Retrieve next command line.
|
| 312 |
+
TAB ...................................... Complete filename & cycle.
|
| 313 |
+
SHIFT-TAB ...................... ESC-TAB Complete filename & reverse cycle.
|
| 314 |
+
ctrl-L ................................... Complete filename, list all.
|