Create setup.sh

setup.sh

@@ -0,0 +1,17 @@
+#!/bin/bash
+
+echo "Running setup.sh..."
+
+# Ensure all required Python packages are installed
+pip install --upgrade pip
+pip install -r requirements.txt
+
+# Manually download the spaCy model
+echo "Downloading spaCy model..."
+python -m spacy download en_core_web_sm
+
+# Ensure Hugging Face model is downloaded
+echo "Downloading Hugging Face model..."
+python -c "from transformers import AutoModel, AutoTokenizer; AutoModel.from_pretrained('emilyalsentzer/Bio_ClinicalBERT'); AutoTokenizer.from_pretrained('emilyalsentzer/Bio_ClinicalBERT')"
+
+echo "Setup completed!"