**Apache Airflow version**: 2.0.0rc3

**Kubernetes version (if you are using kubernetes)** (use `kubectl version`):

**Environment**:

- **Cloud provider or hardware configuration**: Linux
- **OS** (e.g. from /etc/os-release): Ubuntu
- **Kernel** (e.g. `uname -a`): 
- **Install tools**:
- **Others**:

**What happened**:

After shutting down the scheduler, while tasks were in running state, trying to restart the scheduler results in pk violations..

```[2020-12-15 22:43:29,673] {scheduler_job.py:1293} ERROR - Exception when executing SchedulerJob._run_scheduler_loop
Traceback (most recent call last):
  File "/home/jcoder/git/airflow_2.0/pyenv/lib/python3.7/site-packages/sqlalchemy/engine/base.py", line 1277, in _execute_context
    cursor, statement, parameters, context
  File "/home/jcoder/git/airflow_2.0/pyenv/lib/python3.7/site-packages/sqlalchemy/engine/default.py", line 593, in do_execute
    cursor.execute(statement, parameters)
psycopg2.errors.UniqueViolation: duplicate key value violates unique constraint "dag_run_dag_id_run_id_key"
DETAIL:  Key (dag_id, run_id)=(example_task_group, scheduled__2020-12-14T04:31:00+00:00) already exists.
```


**What you expected to happen**:

Scheduler restarts and picks up where it left off.

**How to reproduce it**:

Set example dag ( I used task_group) to schedule_interval `* * * * *` and start the scheduler and let it run for a few minutes. 
Shut down the scheduler
Attempt to restart the scheduler

**Anything else we need to know**:
I came across this doing testing using the LocalExecutor in a virtual env. If no else is able to reproduce it, I'll try again in a clean virtual env.

airflow/jobs/scheduler_job.py
self.log.info("Run %s of %s has timed-out", dag_run.run_id, dag_run.dag_id)
            session.flush()
            
            self._update_dag_next_dagruns([session.query(DagModel).get(dag_run.dag_id)], session)
            callback_to_execute = DagCallbackRequest(
                full_filepath=dag.fileloc,
                dag_id=dag.dag_id,
                execution_date=dag_run.execution_date,
                is_failure_callback=True,
                msg='timed_out',
            )
            
            self._send_dag_callbacks_to_processor(dag_run, callback_to_execute)
            return 0
        if dag_run.execution_date > timezone.utcnow() and not dag.allow_future_exec_dates:
            self.log.error("Execution date is in future: %s", dag_run.execution_date)
            return 0
        if dag.max_active_runs:
            if (
                len(currently_active_runs) >= dag.max_active_runs
                and dag_run.execution_date not in currently_active_runs
            ):
                self.log.info(
                    "DAG %s already has %d active runs, not queuing any tasks for run %s",
                    dag.dag_id,
                    len(currently_active_runs),
                    dag_run.execution_date,
                )
                return 0
        self._verify_integrity_if_dag_changed(dag_run=dag_run, session=session)