GPN-Star
Collection
paper: https://www.biorxiv.org/content/10.1101/2025.09.21.677619v1 code: https://github.com/songlab-cal/gpn
•
30 items
•
Updated
•
5
chrom
stringclasses 6
values | pos
int64 274
20.9M
| ref
stringclasses 4
values | alt
stringclasses 4
values | AF
float64 0
1
| AC
int64 2
1.22k
| AN
int64 4
1.22k
| consequence
stringclasses 12
values | label
bool 2
classes |
|---|---|---|---|---|---|---|---|---|
I
| 855 |
G
|
C
| 0.677083 | 390 | 576 |
intergenic
| false |
I
| 1,222 |
A
|
C
| 0.320248 | 310 | 968 |
intergenic
| false |
I
| 1,761 |
G
|
A
| 0.229572 | 236 | 1,028 |
intergenic
| false |
I
| 1,799 |
T
|
C
| 0.210938 | 216 | 1,024 |
intergenic
| false |
I
| 1,933 |
C
|
G
| 0.736842 | 756 | 1,026 |
intergenic
| false |
I
| 3,048 |
C
|
G
| 0.837294 | 916 | 1,094 |
downstream_gene
| false |
I
| 3,659 |
C
|
T
| 0.843594 | 1,014 | 1,202 |
downstream_gene
| false |
I
| 3,731 |
T
|
A
| 0.219634 | 264 | 1,202 |
downstream_gene
| false |
I
| 3,736 |
T
|
A
| 0.528146 | 638 | 1,208 |
downstream_gene
| false |
I
| 3,959 |
C
|
A
| 0.001637 | 2 | 1,222 |
upstream_gene
| true |
I
| 3,979 |
G
|
C
| 0.535537 | 648 | 1,210 |
upstream_gene
| false |
I
| 4,101 |
A
|
G
| 0.205931 | 250 | 1,214 |
upstream_gene
| false |
I
| 4,159 |
G
|
A
| 0.001637 | 2 | 1,222 |
3_prime_UTR
| true |
I
| 4,210 |
C
|
T
| 0.001637 | 2 | 1,222 |
3_prime_UTR
| true |
I
| 4,335 |
G
|
A
| 0.001637 | 2 | 1,222 |
synonymous
| true |
I
| 5,868 |
T
|
A
| 0.204319 | 246 | 1,204 |
intron
| false |
I
| 6,313 |
G
|
T
| 0.851974 | 1,036 | 1,216 |
start_or_stop
| false |
I
| 6,314 |
T
|
G
| 0.851974 | 1,036 | 1,216 |
missense
| false |
I
| 6,580 |
T
|
A
| 0.76771 | 932 | 1,214 |
intron
| false |
I
| 6,581 |
T
|
C
| 0.76771 | 932 | 1,214 |
intron
| false |
I
| 6,689 |
A
|
G
| 0.316832 | 384 | 1,212 |
intron
| false |
I
| 7,029 |
A
|
G
| 0.001637 | 2 | 1,222 |
intron
| true |
I
| 7,235 |
C
|
T
| 0.212521 | 258 | 1,214 |
intron
| false |
I
| 7,488 |
T
|
G
| 0.001637 | 2 | 1,222 |
intron
| true |
I
| 7,495 |
C
|
T
| 0.001637 | 2 | 1,222 |
intron
| true |
I
| 7,565 |
C
|
T
| 0.536304 | 650 | 1,212 |
intron
| false |
I
| 7,582 |
A
|
T
| 0.001637 | 2 | 1,222 |
intron
| true |
I
| 7,610 |
C
|
G
| 0.001637 | 2 | 1,222 |
intron
| true |
I
| 7,640 |
G
|
A
| 0.205298 | 248 | 1,208 |
intron
| false |
I
| 7,780 |
A
|
T
| 0.001637 | 2 | 1,222 |
intron
| true |
I
| 7,784 |
A
|
G
| 0.001637 | 2 | 1,222 |
intron
| true |
I
| 7,824 |
T
|
A
| 0.220395 | 268 | 1,216 |
intron
| false |
I
| 7,995 |
T
|
A
| 0.21875 | 266 | 1,216 |
intron
| false |
I
| 8,174 |
C
|
T
| 0.228099 | 276 | 1,210 |
intron
| false |
I
| 8,241 |
A
|
G
| 0.227348 | 276 | 1,214 |
intron
| false |
I
| 8,256 |
A
|
C
| 0.001637 | 2 | 1,222 |
intron
| true |
I
| 8,267 |
A
|
G
| 0.536304 | 650 | 1,212 |
intron
| false |
I
| 8,318 |
C
|
A
| 0.001637 | 2 | 1,222 |
intron
| true |
I
| 8,456 |
G
|
T
| 0.001637 | 2 | 1,222 |
intron
| true |
I
| 8,494 |
C
|
T
| 0.001637 | 2 | 1,222 |
intron
| true |
I
| 9,007 |
A
|
T
| 0.766447 | 932 | 1,216 |
intron
| false |
I
| 9,193 |
A
|
T
| 0.001637 | 2 | 1,222 |
intron
| true |
I
| 9,621 |
T
|
C
| 0.20841 | 228 | 1,094 |
intron
| false |
I
| 10,100 |
C
|
T
| 0.001637 | 2 | 1,222 |
missense
| true |
I
| 10,236 |
A
|
T
| 0.001637 | 2 | 1,222 |
upstream_gene
| true |
I
| 10,291 |
C
|
G
| 0.844007 | 1,028 | 1,218 |
upstream_gene
| false |
I
| 10,367 |
T
|
C
| 0.212521 | 258 | 1,214 |
upstream_gene
| false |
I
| 10,668 |
C
|
T
| 0.001637 | 2 | 1,222 |
upstream_gene
| true |
I
| 10,884 |
C
|
T
| 0.001637 | 2 | 1,222 |
upstream_gene
| true |
I
| 10,897 |
A
|
C
| 0.001637 | 2 | 1,222 |
upstream_gene
| true |
I
| 11,498 |
C
|
T
| 0.001637 | 2 | 1,222 |
5_prime_UTR
| true |
I
| 11,513 |
A
|
G
| 0.205931 | 250 | 1,214 |
5_prime_UTR
| false |
I
| 11,517 |
T
|
C
| 0.001637 | 2 | 1,222 |
5_prime_UTR
| true |
I
| 11,532 |
A
|
G
| 0.001637 | 2 | 1,222 |
5_prime_UTR
| true |
I
| 11,539 |
C
|
T
| 0.001637 | 2 | 1,222 |
5_prime_UTR
| true |
I
| 11,730 |
C
|
A
| 0.001637 | 2 | 1,222 |
intron
| true |
I
| 11,738 |
G
|
A
| 0.001637 | 2 | 1,222 |
intron
| true |
I
| 11,745 |
G
|
A
| 0.001637 | 2 | 1,222 |
intron
| true |
I
| 11,828 |
A
|
G
| 0.001637 | 2 | 1,222 |
intron
| true |
I
| 11,837 |
C
|
A
| 0.001637 | 2 | 1,222 |
intron
| true |
I
| 12,531 |
T
|
A
| 0.001637 | 2 | 1,222 |
intron
| true |
I
| 12,532 |
A
|
T
| 0.001637 | 2 | 1,222 |
intron
| true |
I
| 12,561 |
T
|
A
| 0.001637 | 2 | 1,222 |
intron
| true |
I
| 12,676 |
C
|
A
| 0.001637 | 2 | 1,222 |
intron
| true |
I
| 12,814 |
A
|
C
| 0.001637 | 2 | 1,222 |
intron
| true |
I
| 12,837 |
T
|
C
| 0.20462 | 248 | 1,212 |
intron
| false |
I
| 12,846 |
T
|
C
| 0.001637 | 2 | 1,222 |
intron
| true |
I
| 12,856 |
C
|
T
| 0.20462 | 248 | 1,212 |
intron
| false |
I
| 13,017 |
A
|
T
| 0.001637 | 2 | 1,222 |
intron
| true |
I
| 13,252 |
C
|
G
| 0.001637 | 2 | 1,222 |
intron
| true |
I
| 13,314 |
C
|
A
| 0.001637 | 2 | 1,222 |
intron
| true |
I
| 13,933 |
A
|
G
| 0.001637 | 2 | 1,222 |
intron
| true |
I
| 14,085 |
A
|
G
| 0.001637 | 2 | 1,222 |
intron
| true |
I
| 14,236 |
A
|
G
| 0.001637 | 2 | 1,222 |
intron
| true |
I
| 14,255 |
A
|
G
| 0.001637 | 2 | 1,222 |
intron
| true |
I
| 14,589 |
C
|
T
| 0.001637 | 2 | 1,222 |
intron
| true |
I
| 14,590 |
C
|
T
| 0.001637 | 2 | 1,222 |
intron
| true |
I
| 14,657 |
T
|
G
| 0.001637 | 2 | 1,222 |
intron
| true |
I
| 14,897 |
A
|
G
| 0.001637 | 2 | 1,222 |
intron
| true |
I
| 14,913 |
T
|
A
| 0.001637 | 2 | 1,222 |
intron
| true |
I
| 14,954 |
C
|
T
| 0.001637 | 2 | 1,222 |
missense
| true |
I
| 15,024 |
A
|
G
| 0.901639 | 1,100 | 1,220 |
synonymous
| false |
I
| 15,108 |
C
|
T
| 0.001637 | 2 | 1,222 |
synonymous
| true |
I
| 15,200 |
C
|
A
| 0.001637 | 2 | 1,222 |
intron
| true |
I
| 15,472 |
T
|
C
| 0.001637 | 2 | 1,222 |
intron
| true |
I
| 15,955 |
G
|
A
| 0.205298 | 248 | 1,208 |
intron
| false |
I
| 16,057 |
C
|
A
| 0.001637 | 2 | 1,222 |
intron
| true |
I
| 16,204 |
A
|
T
| 0.001637 | 2 | 1,222 |
intron
| true |
I
| 16,456 |
A
|
G
| 0.212171 | 258 | 1,216 |
splice_region
| false |
I
| 16,554 |
C
|
G
| 0.001637 | 2 | 1,222 |
missense
| true |
I
| 16,564 |
T
|
C
| 0.001637 | 2 | 1,222 |
synonymous
| true |
I
| 16,785 |
T
|
C
| 0.001637 | 2 | 1,222 |
3_prime_UTR
| true |
I
| 16,949 |
A
|
T
| 0.001637 | 2 | 1,222 |
downstream_gene
| true |
I
| 16,956 |
A
|
G
| 0.212521 | 258 | 1,214 |
downstream_gene
| false |
I
| 16,973 |
A
|
G
| 0.001637 | 2 | 1,222 |
downstream_gene
| true |
I
| 17,246 |
A
|
G
| 0.220395 | 268 | 1,216 |
downstream_gene
| false |
I
| 17,322 |
C
|
A
| 0.001637 | 2 | 1,222 |
downstream_gene
| true |
I
| 17,469 |
T
|
C
| 0.001637 | 2 | 1,222 |
downstream_gene
| true |
I
| 17,755 |
G
|
A
| 0.001637 | 2 | 1,222 |
3_prime_UTR
| true |
I
| 17,800 |
G
|
A
| 0.001637 | 2 | 1,222 |
3_prime_UTR
| true |