metadata
dataset_info:
- config_name: cells
features:
- name: name
dtype: string
- name: tissue
dtype: string
- name: top_expressed_genes
dtype: string
- name: top_expressed_pathways
dtype: string
- name: genetic_dependencies
dtype: string
- name: description
dtype: string
- name: top_pathways_from_num_markers
dtype: string
splits:
- name: cells
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num_examples: 110
download_size: 167175
dataset_size: 288680
- config_name: chebi
features:
- name: chebi_id
dtype: string
- name: name
dtype: string
- name: definition
dtype: string
- name: formula
dtype: string
- name: smiles
dtype: string
- name: synonyms
list: string
- name: secondary_ids
list: string
splits:
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download_size: 3959122
dataset_size: 12759478
- config_name: genes
features:
- name: gene
dtype: string
- name: uniprot_id
dtype: string
- name: protein_name
dtype: string
- name: protein_function
dtype: string
- name: protein_domains
list: string
- name: protein_interactions
list: string
- name: pathways
list: string
- name: go_mf
list: string
- name: go_bp
list: string
- name: go_cc
list: string
- name: subcellular_location
dtype: string
- name: is_essential
dtype: bool
- name: important_pathways
list: string
splits:
- name: genes
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dataset_size: 1459438599
- config_name: pathway_interactions
features:
- name: participant_a
dtype: string
- name: interaction_type
dtype: string
- name: participant_b
dtype: string
- name: chebi_names
dtype: string
- name: ascii_chebi_names
dtype: string
- name: interaction_type_description
dtype: string
- name: pathway_names
dtype: string
- name: mediator_ids
dtype: string
- name: interaction_data_source
dtype: string
- name: interaction_pubmed_id
dtype: string
- name: query_gene
dtype: string
splits:
- name: train
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download_size: 11086613
dataset_size: 596848476
- config_name: pathway_id_mapping
features:
- name: msigdb_id
dtype: string
- name: pi_pathway_names
list: string
splits:
- name: pathway_id_mapping
num_bytes: 337116
num_examples: 1704
download_size: 84279
dataset_size: 337116
- config_name: pathways
features:
- name: pathway
dtype: string
- name: genes
list: string
- name: brief_description
dtype: string
splits:
- name: pathways
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num_examples: 14743
download_size: 61697287
dataset_size: 309295731
- config_name: reasoning_kaufman
features:
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dtype: large_string
- name: protein_target
dtype: large_string
- name: cell_type
dtype: large_string
- name: tissue_type
dtype: large_string
- name: stimulation
dtype: large_string
- name: pathway_name
dtype: large_string
- name: pathway_change
dtype: large_string
- name: pathway_score
dtype: float64
- name: experiment
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- name: cell_file
dtype: large_string
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- name: validation
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num_examples: 1140556
- name: test
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num_examples: 1141698
download_size: 190255550
dataset_size: 3918826247
- config_name: reasoning_marson
features:
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dtype: large_string
- name: protein_target
dtype: large_string
- name: cell_type
dtype: large_string
- name: tissue_type
dtype: large_string
- name: stimulation
dtype: large_string
- name: pathway_name
dtype: large_string
- name: pathway_change
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- name: pathway_score
dtype: float64
- name: experiment
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- name: cell_file
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- name: donor_id
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splits:
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- name: validation
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- name: test
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download_size: 658993353
dataset_size: 13660175962
- config_name: reasoning_nadig_replogle_new
features:
- name: gene_target
dtype: string
- name: protein_target
dtype: string
- name: cell_type
dtype: string
- name: tissue_type
dtype: string
- name: pathway_name
dtype: string
- name: pathway_change
dtype: string
- name: pathway_score
dtype: float64
- name: experiment
dtype: string
- name: cell_file
dtype: string
- name: is_essential
dtype: bool
- name: is_offtarget
dtype: bool
splits:
- name: train
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- name: test
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num_examples: 696756
download_size: 28379155
dataset_size: 655055631
- config_name: reasoning_norman
features:
- name: gene_target
list: string
- name: protein_target
list: string
- name: cell_type
dtype: string
- name: tissue_type
dtype: string
- name: stimulation
dtype: string
- name: pathway_name
dtype: string
- name: pathway_change
dtype: string
- name: pathway_score
dtype: float64
- name: experiment
dtype: string
- name: cell_file
dtype: string
splits:
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- name: validation
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num_examples: 165672
- name: test
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num_examples: 165838
download_size: 25791989
dataset_size: 493895785
- config_name: reasoning_papalexi2021
features:
- name: gene_target
dtype: string
- name: protein_target
dtype: string
- name: cell_type
dtype: string
- name: tissue_type
dtype: string
- name: pathway_name
dtype: string
- name: pathway_change
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- name: pathway_score
dtype: float64
- name: experiment
dtype: string
- name: cell_file
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splits:
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- name: validation
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- name: test
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num_examples: 16588
download_size: 2657990
dataset_size: 43857983
- config_name: reasoning_xu2026_perturbfate
features:
- name: gene_target
dtype: large_string
- name: protein_target
dtype: large_string
- name: cell_type
dtype: large_string
- name: tissue_type
dtype: large_string
- name: stimulation
dtype: large_string
- name: pathway_name
dtype: large_string
- name: pathway_change
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- name: pathway_score
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- name: experiment
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- name: cell_file
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splits:
- name: train
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- name: validation
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num_examples: 95815
- name: test
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num_examples: 95911
download_size: 13860042
dataset_size: 338814718
configs:
- config_name: cells
data_files:
- split: cells
path: cells/cells-*
- config_name: chebi
data_files:
- split: chebi
path: chebi/chebi-*
- config_name: genes
data_files:
- split: genes
path: genes/genes-*
- config_name: pathway_interactions
data_files:
- split: train
path: pathway_interactions/train-*
- config_name: pathway_id_mapping
data_files:
- split: pathway_id_mapping
path: pathway_id_mapping/pathway_id_mapping-*
- config_name: pathways
data_files:
- split: pathways
path: pathways/pathways-*
- config_name: reasoning_kaufman
data_files:
- split: train
path: reasoning_kaufman/train-*
- split: validation
path: reasoning_kaufman/validation-*
- split: test
path: reasoning_kaufman/test-*
- config_name: reasoning_marson
data_files:
- split: train
path: reasoning_marson/train-*
- split: validation
path: reasoning_marson/validation-*
- split: test
path: reasoning_marson/test-*
- config_name: reasoning_nadig_replogle_new
data_files:
- split: train
path: reasoning_nadig_replogle_new/train-*
- split: test
path: reasoning_nadig_replogle_new/test-*
- config_name: reasoning_norman
data_files:
- split: train
path: reasoning_norman/train-*
- split: validation
path: reasoning_norman/validation-*
- split: test
path: reasoning_norman/test-*
- config_name: reasoning_papalexi2021
data_files:
- split: train
path: reasoning_papalexi2021/train-*
- split: validation
path: reasoning_papalexi2021/validation-*
- split: test
path: reasoning_papalexi2021/test-*
- config_name: reasoning_xu2026_perturbfate
data_files:
- split: train
path: reasoning_xu2026_perturbfate/train-*
- split: validation
path: reasoning_xu2026_perturbfate/validation-*
- split: test
path: reasoning_xu2026_perturbfate/test-*