Datasets:
songlab
/
TraitGym

Dataset card Data Studio Files
xet
Community
1
chrom
stringclasses
22 values
pos
int64
99.5k
249M
ref
stringclasses
4 values
alt
stringclasses
4 values
pip
float64
0
1
trait
stringclasses
259 values
label
bool
2 classes
maf
float64
0
0.5
ld_score
float64
1.53
628
consequence
stringclasses
16 values
tss_dist
int64
0
1.58M
match_group
stringlengths
5
37
1
30,058,725
A
C
0
false
0.47879
60.859
dELS
518,099
dELS_12
1
30,088,741
C
T
0
false
0.38319
59.246
dELS
488,083
dELS_12
1
30,723,697
C
A
0
false
0.018734
15.679
pELS
111
pELS_1
1
30,728,493
G
A
0
false
0.26469
47.921
dELS
4,907
dELS_3
1
30,815,496
C
T
0
false
0.051359
25.495
non_coding_transcript_exon_variant
57,721
non_coding_transcript_exon_variant_3
1
30,847,534
G
T
0
false
0.46217
37.401
dELS
31,205
dELS_21
1
31,475,553
G
C
0
false
0.35345
269.43
intergenic_variant
61,739
intergenic_variant_7
1
31,475,858
A
G
0
false
0.35329
269.25
intergenic_variant
62,044
intergenic_variant_7
1
31,476,282
A
G
0
false
0.35308
269
intergenic_variant
62,468
intergenic_variant_7
1
31,480,571
C
T
0
false
0.35341
268.67
intergenic_variant
66,757
intergenic_variant_7
1
31,481,402
C
T
0
false
0.35101
268.63
intergenic_variant
67,588
intergenic_variant_7
1
31,484,990
A
G
0
false
0.35114
269.03
intergenic_variant
71,176
intergenic_variant_7
1
31,680,824
C
T
0.001342
false
0.42435
99.536
dELS
2,923
dELS_26
1
31,737,617
C
A
0.000573
false
0.091705
70.863
dELS
19,183
dELS_14
1
32,173,456
G
C
0
false
0.22454
49.713
3_prime_UTR_variant
6,218
3_prime_UTR_variant_1
1
32,816,791
G
A
0
false
0.1259
81.896
5_prime_UTR_variant
23
5_prime_UTR_variant_2
1
33,177,053
A
G
0
false
0.021754
84.46
PLS_flank
502
PLS_flank_0
1
33,177,055
A
G
0
false
0.022654
81.675
PLS_flank
504
PLS_flank_0
1
33,177,187
C
T
0
false
0.021412
84.921
PLS_flank
636
PLS_flank_0
1
33,430,396
C
A
0
false
0.016696
37.51
5_prime_UTR_variant
249
5_prime_UTR_variant_1
1
33,448,732
T
G
0.904272
Urea
true
0.32908
132.75
intergenic_variant
17,636
intergenic_variant_1
1
33,579,576
G
A
0
false
0.23795
31.568
dELS
6,985
dELS_1
1
34,328,690
C
G
0
false
0.041854
21.076
dELS
151,782
dELS_28
1
34,743,097
C
T
0
false
0.37482
38.179
dELS_flank
11,949
dELS_flank_3
1
34,758,312
A
C
0
false
0.047057
21.346
3_prime_UTR_variant
1,427
3_prime_UTR_variant_3
1
34,762,072
A
G
0
false
0.038883
18.538
3_prime_UTR_variant
2,331
3_prime_UTR_variant_3
1
34,855,089
T
G
0
false
0.046064
16.543
3_prime_UTR_variant
3,955
3_prime_UTR_variant_3
1
34,859,812
C
T
0
false
0.45328
35.638
PLS
56
PLS_4
1
36,083,895
C
T
0
false
0.070841
29.75
PLS
198
PLS_2
1
36,251,088
A
G
0
false
0.007396
16.123
dELS_flank
26,644
dELS_flank_13
1
36,251,547
C
T
0
false
0.0074
16.105
dELS_flank
27,103
dELS_flank_13
1
36,415,228
G
A
0.000715
false
0.35303
84.323
dELS_flank
6,952
dELS_flank_8
1
36,478,315
C
G
1
Baso,WBC
true
0.42344
63.613
intron_variant
1,203
intron_variant_1
1
37,596,105
G
C
0
false
0.40198
136.43
PLS
167
PLS_3
1
37,612,628
A
G
0
false
0.47106
121.29
3_prime_UTR_variant
16,690
3_prime_UTR_variant_0
1
37,678,596
G
T
0
false
0.38362
41.893
dELS_flank
11,907
dELS_flank_3
1
37,729,910
A
G
0
false
0.21792
81.084
dELS
23,058
dELS_25
1
37,730,354
G
A
0
false
0.21774
81.03
dELS
22,614
dELS_25
1
38,137,641
G
A
0
false
0.014937
13.612
intron_variant
90,847
intron_variant_3
1
39,196,982
C
T
0
false
0.23735
96.818
dELS
7,712
dELS_2
1
39,570,256
G
T
0.973962
CRP
true
0.19719
291.83
dELS_flank
1,390
dELS_flank_2
1
39,590,220
A
G
0
false
0.04296
50.281
dELS_flank
13,429
dELS_flank_11
1
39,693,986
C
T
0.002807
false
0.13174
47.276
dELS_flank
1,803
dELS_flank_10
1
40,340,102
A
G
0
false
0.14965
55.028
dELS
4,747
dELS_18
1
40,391,858
A
C
0
false
0.44047
67.355
pELS
1,486
pELS_2
1
40,450,262
C
G
0
false
0.01033
26.897
PLS
154
PLS_0
1
40,712,211
A
G
0
false
0.026133
83.787
dELS_flank
2,667
dELS_flank_1
1
40,820,681
G
A
0.001672
false
0.45973
44.412
dELS
3,415
dELS_24
1
40,834,649
C
T
0
false
0.001467
6.8113
intron_variant
17,383
intron_variant_2
1
40,835,347
T
C
0
false
0.4799
26.55
dELS
18,081
dELS_9
1
40,835,362
G
C
0
false
0.14877
22.337
dELS
18,096
dELS_16
1
40,850,007
C
T
0
false
0.21752
22.602
dELS
12,355
dELS_6
1
40,850,195
A
C
0.000691
false
0.48666
28.816
dELS
12,167
dELS_9
1
40,855,750
C
T
0
false
0.463
48.579
dELS
6,612
dELS_24
1
40,873,866
G
T
0.008062
false
0.1368
64.03
intron_variant
11,502
intron_variant_0
1
40,873,965
G
C
0.008729
false
0.13666
64.006
intron_variant
11,601
intron_variant_0
1
41,259,351
C
G
0
false
0.001202
6.8636
intron_variant
17,044
intron_variant_2
1
41,358,872
C
T
0
false
0.12664
136.18
dELS
3,058
dELS_11
1
41,359,374
T
C
0
false
0.12643
135.83
dELS
2,556
dELS_11
1
41,484,884
G
A
0
false
0.014836
29.672
PLS
200
PLS_0
1
41,497,351
A
T
0
false
0.0623
53.984
dELS
12,667
dELS_4
1
41,497,637
A
G
0
false
0.055586
52.569
dELS
12,953
dELS_4
1
41,498,043
G
T
0
false
0.055368
52.242
dELS
13,359
dELS_4
1
41,498,140
G
A
0
false
0.055466
52.554
dELS
13,456
dELS_4
1
41,521,432
C
T
0
false
0.018491
49.312
dELS
36,748
dELS_23
1
41,543,601
G
A
0
false
0.057217
31.829
non_coding_transcript_exon_variant
58,917
non_coding_transcript_exon_variant_3
1
41,646,565
T
C
0.002067
false
0.34482
162.46
intron_variant
15,759
intron_variant_12
1
42,463,786
G
A
0
false
0.017294
55.071
5_prime_UTR_variant
259
5_prime_UTR_variant_1
1
42,939,042
T
C
0
false
0.21245
109.76
dELS
4,195
dELS_19
1
42,939,793
C
T
0
false
0.21229
110.15
dELS
3,444
dELS_19
1
42,939,875
C
T
0
false
0.21228
110.18
dELS
3,362
dELS_19
1
42,970,380
G
A
0.999461
Ca
true
0.40667
100.89
non_coding_transcript_exon_variant
11,511
non_coding_transcript_exon_variant_2
1
42,989,839
T
C
0.000665
false
0.037423
67.074
pELS
30,970
pELS_5
1
43,147,125
G
A
0
false
0.018279
89.443
PLS_flank
778
PLS_flank_0
1
43,530,749
T
A
0
false
0.015487
30.389
PLS
126
PLS_0
1
43,887,565
G
A
0
false
0.20488
288.26
dELS_flank
6,819
dELS_flank_2
1
43,966,182
C
A
0
false
0.00004
39.224
5_prime_UTR_variant
242
5_prime_UTR_variant_1
1
43,980,506
C
A
0
false
0.001685
9.1329
5_prime_UTR_variant
569
5_prime_UTR_variant_3
1
44,031,577
T
C
0.992081
MCH,MCV
true
0.3192
98.234
PLS
114
PLS_1
1
44,425,816
C
T
0.000945
false
0.22147
76.36
dELS
20,527
dELS_25
1
44,613,482
C
T
0
false
0.04403
48.86
dELS_flank
12,843
dELS_flank_11
1
44,614,727
A
G
0
false
0.04459
48.741
dELS_flank
11,598
dELS_flank_11
1
44,788,128
C
T
0
false
0.000043
143.25
5_prime_UTR_variant
41
5_prime_UTR_variant_4
1
44,842,945
G
C
0
false
0.000042
153.54
5_prime_UTR_variant
0
5_prime_UTR_variant_4
1
45,106,987
G
A
0
false
0.022773
87.821
dELS
94,079
dELS_22
1
46,202,680
G
A
0
false
0.017261
88.629
PLS_flank
557
PLS_flank_0
1
46,599,754
T
C
0
false
0.23024
98.657
dELS
4,459
dELS_2
1
46,614,533
T
C
0
false
0.003226
16.918
5_prime_UTR_variant
599
5_prime_UTR_variant_3
1
46,615,894
A
C
0
false
0.000838
9.8061
5_prime_UTR_variant
570
5_prime_UTR_variant_3
1
46,633,563
A
C
0
false
0.48618
156.49
3_prime_UTR_variant
11,692
3_prime_UTR_variant_0
1
47,153,138
C
T
0
false
0.068364
130.45
intron_variant
15,682
intron_variant_11
1
48,222,704
A
G
0.00241
false
0.10793
117.57
5_prime_UTR_variant
11
5_prime_UTR_variant_0
1
48,501,635
G
A
0
false
0.005876
24.181
dELS_flank
29,426
dELS_flank_6
1
48,550,328
G
A
0
false
0.077695
43.238
intron_variant
78,119
intron_variant_10
1
48,550,452
T
C
0
false
0.077704
43.185
intron_variant
78,243
intron_variant_10
1
50,067,414
T
C
0
false
0.049883
45.136
non_coding_transcript_exon_variant
19,399
non_coding_transcript_exon_variant_1
1
50,418,558
G
C
0
false
0.09437
72.932
3_prime_UTR_variant
3,073
3_prime_UTR_variant_2
1
50,921,296
T
C
0
false
0.009178
26.654
intron_variant
38,970
intron_variant_9
1
51,268,264
T
C
0
false
0.008951
45.71
dELS
28,595
dELS_20
1
51,656,235
A
T
0
false
0.15399
139.81
intron_variant
39,125
intron_variant_5