Datasets:
songlab
/
TraitGym

Dataset card Data Studio Files
xet
Community
1
chrom
stringclasses
22 values
pos
int64
99.5k
249M
ref
stringclasses
4 values
alt
stringclasses
4 values
pip
float64
0
1
trait
stringclasses
259 values
label
bool
2 classes
maf
float64
0
0.5
ld_score
float64
1.53
628
consequence
stringclasses
16 values
tss_dist
int64
0
1.58M
match_group
stringlengths
5
37
1
51,850,952
G
A
0
false
0.007681
45.066
dELS
27,087
dELS_20
1
52,633,219
C
T
0
false
0.10708
112.54
5_prime_UTR_variant
50
5_prime_UTR_variant_0
1
52,726,497
G
T
0
false
0.013497
161.42
5_prime_UTR_variant
29
5_prime_UTR_variant_4
1
52,726,498
G
A
0
false
0.013497
161.42
5_prime_UTR_variant
30
5_prime_UTR_variant_4
1
52,927,340
C
T
0
false
0.008895
158.75
5_prime_UTR_variant
21
5_prime_UTR_variant_4
1
53,902,580
A
C
0
false
0.38739
88.883
dELS
8,368
dELS_10
1
54,127,292
C
T
0.000668
false
0.38371
94.85
intergenic_variant
22,996
intergenic_variant_0
1
54,264,321
C
A
0
false
0.009798
6.8826
intron_variant
12,460
intron_variant_7
1
54,288,588
G
T
0
false
0.3344
20.748
dELS_flank
36,727
dELS_flank_5
1
54,585,990
G
A
0
false
0.022904
47.745
dELS
37,534
dELS_23
1
54,623,643
A
C
0
false
0.31213
87.077
PLS
86
PLS_1
1
54,623,644
T
C
0
false
0.31205
87.046
PLS
87
PLS_1
1
54,623,788
G
C
0
false
0.31504
87.822
PLS
231
PLS_1
1
54,764,790
C
G
0
false
0.44733
75.581
PLS
266
PLS_4
1
54,970,388
A
G
0.000795
false
0.36452
82.093
dELS_flank
10,239
dELS_flank_8
1
54,970,432
T
C
0.000795
false
0.36461
82.097
dELS_flank
10,195
dELS_flank_8
1
54,976,684
A
G
0
false
0.42242
66.558
intron_variant
3,943
intron_variant_1
1
55,052,420
G
A
0.006669
false
0.042196
47.255
dELS_flank
12,124
dELS_flank_11
1
55,053,079
C
T
1
ApoB
true
0.37639
39.42
dELS_flank
12,783
dELS_flank_3
1
55,053,501
G
A
1
ApoB
true
0.38525
89.354
dELS
13,205
dELS_10
1
55,232,461
C
T
0.999994
ApoB,LDLC
true
0.00145
6.8618
intron_variant
17,096
intron_variant_2
1
56,399,434
G
T
0
false
0.16999
38.254
dELS
180,128
dELS_29
1
56,399,530
A
G
0
false
0.2121
38.526
dELS
180,032
dELS_29
1
56,403,696
T
C
0
false
0.27643
42.447
dELS
175,866
dELS_27
1
56,464,782
G
A
0
false
0.00152
6.1438
intron_variant
114,780
intron_variant_13
1
56,513,759
T
C
0
false
0.045529
23.605
non_coding_transcript_exon_variant
65,803
non_coding_transcript_exon_variant_3
1
56,650,428
G
A
0
false
0.019161
83.922
dELS_flank
5,113
dELS_flank_1
1
56,659,241
T
C
0
false
0.35792
156.39
intron_variant
13,926
intron_variant_12
1
56,659,305
G
A
0
false
0.35867
156.69
intron_variant
13,990
intron_variant_12
1
56,664,031
A
G
0
false
0.35837
156.61
intron_variant
18,716
intron_variant_12
1
56,824,073
A
T
0
false
0.21964
20.86
non_coding_transcript_exon_variant
4,668
non_coding_transcript_exon_variant_4
1
56,836,012
C
A
0
false
0.21754
22.02
dELS
16,607
dELS_6
1
57,253,258
C
T
0
false
0.02052
51.418
dELS
37,806
dELS_23
1
58,150,560
A
G
0
false
0.34987
120.9
non_coding_transcript_exon_variant
388,257
non_coding_transcript_exon_variant_7
1
58,756,148
G
C
0
false
0.004933
24.548
dELS_flank
27,898
dELS_flank_6
1
58,930,375
G
T
0
false
0.051912
14.718
dELS
146,327
dELS_28
1
59,114,813
A
G
0
false
0.26772
43.052
dELS_flank
181,824
dELS_flank_12
1
59,116,943
C
A
0
false
0.18215
35.892
dELS
179,694
dELS_29
1
59,128,853
G
A
0
false
0.26633
42.988
dELS
167,784
dELS_27
1
59,137,400
C
T
0
false
0.29258
36.408
dELS
159,237
dELS_27
1
59,181,947
T
G
0
false
0.001727
6.1245
intron_variant
114,690
intron_variant_13
1
59,644,837
C
T
0
false
0.013905
13.275
intron_variant
90,918
intron_variant_3
1
61,891,259
G
A
0
false
0.001726
6.7124
intron_variant
17,195
intron_variant_2
1
62,213,459
A
G
0
false
0.092684
70.171
dELS
18,609
dELS_14
1
62,252,087
G
A
0
false
0.1334
64.211
intron_variant
11,336
intron_variant_0
1
62,284,200
T
C
0
false
0.35324
167.55
intron_variant
11,408
intron_variant_12
1
62,296,516
G
A
0
false
0.38361
142.45
pELS
22,784
pELS_6
1
63,207,669
T
C
0
false
0.002825
6.6255
intron_variant
114,897
intron_variant_13
1
63,261,871
T
C
0.999823
Height
true
0.04905
26.762
non_coding_transcript_exon_variant
60,695
non_coding_transcript_exon_variant_3
1
64,112,531
G
T
0
false
0.13458
45.345
pELS
91,091
pELS_3
1
64,186,722
T
C
0
false
0.37062
104.66
pELS
16,900
pELS_6
1
64,364,060
C
G
0
false
0.01498
18.866
dELS_flank
106,068
dELS_flank_4
1
64,550,998
G
A
0
false
0.28388
42.145
dELS_flank
45,096
dELS_flank_0
1
64,838,205
T
C
0.979785
Eosino
true
0.015263
12.981
intron_variant
93,109
intron_variant_3
1
64,848,529
C
A
0.996294
Eosino
true
0.013542
19.246
dELS_flank
103,433
dELS_flank_4
1
64,963,574
G
A
0.001212
false
0.13094
130.32
dELS
2,709
dELS_11
1
64,969,742
C
G
0.003047
false
0.1289
128.55
dELS
2,805
dELS_11
1
65,298,786
T
C
0
false
0.41399
107.11
non_coding_transcript_exon_variant
10,756
non_coding_transcript_exon_variant_2
1
65,516,705
G
A
0.998833
Age_at_Menarche
true
0.024817
31.246
intron_variant
8,983
intron_variant_4
1
65,548,380
G
A
0
false
0.001273
6.7406
intron_variant
17,165
intron_variant_2
1
65,604,098
A
G
0.999536
CRP
true
0.14951
142.19
intron_variant
38,551
intron_variant_5
1
66,272,166
A
G
0.002946
false
0.38809
85.128
dELS
14,518
dELS_10
1
66,302,446
A
G
0
false
0.009697
42.259
dELS
28,281
dELS_20
1
66,455,959
G
C
0.000372
false
0.002094
5.572
DNase-H3K4me3
77,307
DNase-H3K4me3_0
1
67,622,756
A
G
0.984686
CRP
true
0.2729
56.7
intergenic_variant
62,444
intergenic_variant_2
1
67,686,705
T
C
0.001238
false
0.28829
140.21
pELS
1,299
pELS_0
1
67,686,755
C
T
0.001209
false
0.28849
140.26
pELS
1,349
pELS_0
1
67,938,372
A
G
0.000627
false
0.013261
20.15
dELS_flank
104,904
dELS_flank_4
1
68,117,603
C
A
0
false
0.0414
31.518
non_coding_transcript_exon_variant
65,885
non_coding_transcript_exon_variant_3
1
68,199,340
T
C
1
eBMD
true
0.34494
23.909
dELS_flank
32,346
dELS_flank_5
1
68,465,683
A
G
0.002212
false
0.14938
131.38
dELS_flank
15,728
dELS_flank_7
1
68,883,105
T
A
0
false
0.32192
70.435
non_coding_transcript_exon_variant
385,883
non_coding_transcript_exon_variant_7
1
69,538,926
A
T
0
false
0.001741
17.125
intergenic_variant
28,995
intergenic_variant_4
1
69,568,369
C
T
0
false
0.12241
113.66
5_prime_UTR_variant
28
5_prime_UTR_variant_0
1
70,430,950
G
A
0
false
0.05715
48.225
non_coding_transcript_exon_variant
19,566
non_coding_transcript_exon_variant_1
1
71,027,314
C
T
0
false
0.069419
134.97
intron_variant
20,318
intron_variant_11
1
71,030,670
A
G
0
false
0.069397
135.11
intron_variant
16,962
intron_variant_11
1
71,487,440
G
A
0
false
0.24168
178.89
non_coding_transcript_exon_variant
406,150
non_coding_transcript_exon_variant_7
1
72,119,826
T
C
0
false
0.01456
81.211
dELS
18,895
dELS_13
1
72,276,704
C
T
0
false
0.20078
286.82
dELS_flank
5,834
dELS_flank_2
1
72,285,869
A
G
0
false
0.19266
292.31
dELS_flank
3,329
dELS_flank_2
1
72,286,390
G
A
0
false
0.19249
292.32
dELS_flank
3,850
dELS_flank_2
1
72,287,256
C
T
0
false
0.19266
292.39
dELS_flank
4,716
dELS_flank_2
1
73,980,659
G
A
0
false
0.034621
88.683
dELS
94,130
dELS_22
1
75,764,472
T
A
0
false
0.013375
77.915
dELS
21,758
dELS_13
1
75,893,875
C
T
0
false
0.011251
27.351
intron_variant
38,528
intron_variant_9
1
76,406,217
T
C
0
false
0.016082
11.933
intron_variant
92,416
intron_variant_3
1
77,148,444
T
C
0
false
0.003847
9.5553
DNase-H3K4me3
70,984
DNase-H3K4me3_0
1
77,184,209
G
A
0
false
0.15012
138.9
intron_variant
35,219
intron_variant_5
1
77,263,984
C
T
0
false
0.33515
131.15
intergenic_variant
18,034
intergenic_variant_1
1
77,268,877
A
G
0
false
0.33526
131.54
intergenic_variant
13,141
intergenic_variant_1
1
77,273,153
A
T
0
false
0.33571
131.8
intergenic_variant
8,865
intergenic_variant_1
1
77,273,163
T
A
0
false
0.33571
131.8
intergenic_variant
8,855
intergenic_variant_1
1
77,282,053
G
T
0
false
0.11767
129.56
5_prime_UTR_variant
33
5_prime_UTR_variant_0
1
77,438,940
T
A
0
false
0.12673
79.258
pELS
93,166
pELS_3
1
77,701,824
C
T
0
false
0.047445
69.336
intron_variant
18,404
intron_variant_8
1
77,984,833
C
A
0.999774
ALP,BW,Height
true
0.12432
131.78
dELS
4,648
dELS_11
1
78,004,822
C
T
0
false
0.01789
29.951
PLS
116
PLS_0
1
78,064,000
C
G
0
false
0.048964
67.858
intron_variant
18,033
intron_variant_8
1
78,321,211
T
C
0
false
0.001295
6.8014
intron_variant
17,326
intron_variant_2